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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04700 and RR42_RS04705 are separated by 132 nucleotides
RR42_RS04705 and RR42_RS04710 are separated by 108 nucleotides
RR42_RS04710 and RR42_RS04715 are separated by 23 nucleotides
RR42_RS04715 and RR42_RS04720 are separated by 15 nucleotides
RR42_RS04700: RR42_RS04700 - ribonuclease G, at 1,047,130 to 1,048,596
_RS04700
RR42_RS04705: RR42_RS04705 - septum formation inhibitor Maf, at 1,048,729 to 1,049,334
_RS04705
RR42_RS04710: RR42_RS04710 - 50S rRNA methyltransferase, at 1,049,443 to 1,049,913
_RS04710
RR42_RS04715: RR42_RS04715 - ribosome silencing factor RsfS, at 1,049,937 to 1,050,695
_RS04715
RR42_RS04720: RR42_RS04720 - nicotinate-nucleotide adenylyltransferase, at 1,050,711 to 1,051,481
_RS04720
Group
Condition
RR42
_RS04700
RR42
_RS04705
RR42
_RS04710
RR42
_RS04715
RR42
_RS04720
lb
LB
-3.4
-0.2
+0.0
-0.9
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-3.9
+0.0
-0.1
-0.4
N.D.
carbon source
L-Proline (C)
-3.3
-0.2
-0.2
-0.5
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-3.2
+0.1
-1.0
-0.0
N.D.
carbon source
propionate (C)
-3.2
-0.4
-0.6
+0.1
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-3.2
-0.1
+0.2
-1.0
N.D.
carbon source
Protocatechuic Acid (C)
-1.9
-0.4
-0.6
-1.0
N.D.
carbon source
D,L-Lactate (C)
-3.1
-0.2
-0.8
+0.1
N.D.
carbon source
L-Leucine (C)
-3.2
-0.2
-0.2
-0.3
N.D.
stress
R2A with Chlorite 4 mM
-3.3
+0.1
-0.6
-0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-3.2
-0.2
-0.3
-0.0
N.D.
carbon source
L-Glutamine (C)
-3.2
-0.0
-0.1
-0.4
N.D.
stress
R2A with Zinc 0.1 mM
-2.7
-0.6
-0.7
+0.3
N.D.
carbon source
a-Ketoglutaric (C)
-3.1
+0.3
-1.1
+0.4
N.D.
carbon source
L-Asparagine (C)
-2.0
-0.1
-0.8
-0.7
N.D.
carbon source
D,L-Lactate (C)
-3.1
+0.1
-0.2
-0.2
N.D.
carbon source
pyruvate (C)
-3.0
+0.1
-0.2
-0.2
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-3.5
+0.2
+0.1
-0.1
N.D.
nitrogen source
nitrite (N)
-2.0
+0.1
-0.4
-0.9
N.D.
carbon source
Dodecandioic (C)
-2.9
+0.1
-0.3
-0.2
N.D.
carbon source
Octanoic (C)
-2.9
-0.2
+0.1
-0.3
N.D.
carbon source
L-Lactate (C)
-2.2
-0.2
-0.9
+0.1
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-3.1
-0.5
+0.2
+0.3
N.D.
carbon source
Valeric (C)
-2.7
+0.1
-0.9
+0.5
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-2.1
-0.0
-0.9
+0.3
N.D.
carbon source
Heptanoic (C)
-2.9
+0.1
+0.3
-0.3
N.D.
nitrogen source
Glycine (N)
-2.8
-0.1
+0.4
+0.1
N.D.
nitrogen source
L-Valine (N)
-2.9
+0.0
+0.6
-0.1
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-2.7
-0.2
+0.4
+0.4
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-2.3
-0.2
+1.3
-0.1
N.D.
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