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Gene
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Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04675 and RR42_RS04680 are separated by 76 nucleotides
RR42_RS04680 and RR42_RS04685 are separated by 43 nucleotides
RR42_RS04685 and RR42_RS04690 are separated by 118 nucleotides
RR42_RS04690 and RR42_RS04695 are separated by 137 nucleotides
RR42_RS04675: RR42_RS04675 - alkylhydroperoxidase, at 1,042,895 to 1,043,482
_RS04675
RR42_RS04680: RR42_RS04680 - potassium transporter Kef, at 1,043,559 to 1,044,773
_RS04680
RR42_RS04685: RR42_RS04685 - lipoprotein, at 1,044,817 to 1,045,326
_RS04685
RR42_RS04690: RR42_RS04690 - fatty acid hydroxylase, at 1,045,445 to 1,046,365
_RS04690
RR42_RS04695: RR42_RS04695 - hypothetical protein, at 1,046,503 to 1,047,117
_RS04695
Group
Condition
RR42
_RS04675
RR42
_RS04680
RR42
_RS04685
RR42
_RS04690
RR42
_RS04695
carbon source
Dodecandioic (C)
-0.6
+0.0
-0.4
-0.3
-0.1
carbon source
Hexanoic (C)
-0.6
+0.0
-0.0
-0.2
-0.5
carbon source
Octanoic (C)
-0.3
-0.4
-0.1
-0.2
-0.3
stress
R2A with nitrate 150 mM
-0.6
-0.1
+0.3
-0.3
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
-0.5
+0.1
-0.4
-0.0
-0.3
carbon source
Suberic (C)
+0.2
-0.4
-0.2
-0.2
-0.3
carbon source
propionate (C)
-0.7
+0.2
-0.2
-0.2
+0.1
carbon source
Valeric (C)
+0.2
-0.1
-0.3
-0.2
-0.4
carbon source
adipate (C)
-0.3
+0.1
+0.1
-0.4
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.4
+0.0
+0.2
+0.3
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.1
+0.3
-0.2
-0.4
stress
R2A with Cobalt chloride 0.3 mM
-0.7
+0.1
+0.2
+0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.2
-0.2
+0.0
-0.3
temperature
R2A 23C
-0.7
+0.1
+0.0
+0.2
+0.6
nitrogen source
casaminos (N)
+0.7
+0.1
-0.2
-0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
-0.2
+0.0
-0.1
-0.2
stress
R2A with nitrate 200 mM
-0.2
+0.2
-0.2
+0.4
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
+0.1
-0.1
-0.3
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
+0.4
-0.3
+0.0
-0.1
carbon source
Hexanoic (C)
-0.1
+0.3
-0.2
+0.0
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
+0.0
+0.2
-0.1
-0.2
carbon source
L-Lactate (C)
+0.4
-0.2
+0.3
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.2
-0.2
+0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
-0.2
-0.1
+0.0
+0.1
carbon source
D-Fructose (C)
-0.2
+0.1
+0.2
+0.2
+0.4
nitrogen source
nitrite (N)
+0.8
+0.0
-0.0
+0.1
+0.1
carbon source
L-Asparagine (C)
+0.6
-0.1
+0.4
+0.0
+0.2
nitrogen source
L-Serine (N)
+1.1
-0.1
-0.0
+0.2
+0.2
carbon source
L-Tryptophan (C)
+0.7
-0.1
+0.3
+0.1
+0.4
lb
LB
+0.5
+0.4
+0.5
+0.4
-0.3
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