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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04525 and RR42_RS04530 are separated by 284 nucleotides
RR42_RS04530 and RR42_RS04535 are separated by 70 nucleotides
RR42_RS04535 and RR42_RS04540 are separated by 84 nucleotides
RR42_RS04540 and RR42_RS04545 are separated by 118 nucleotides
RR42_RS04525: RR42_RS04525 - hypothetical protein, at 1,010,686 to 1,011,048
_RS04525
RR42_RS04530: RR42_RS04530 - pyrimidine permease, at 1,011,333 to 1,012,649
_RS04530
RR42_RS04535: RR42_RS04535 - cysteine synthase, at 1,012,720 to 1,013,622
_RS04535
RR42_RS04540: RR42_RS04540 - lytic transglycosylase, at 1,013,707 to 1,014,813
_RS04540
RR42_RS04545: RR42_RS04545 - deacetylase, at 1,014,932 to 1,015,855
_RS04545
Group
Condition
RR42
_RS04525
RR42
_RS04530
RR42
_RS04535
RR42
_RS04540
RR42
_RS04545
carbon source
L-Tryptophan (C)
N.D.
+0.1
-5.8
-0.4
-0.3
nitrogen source
L-Tryptophan (N)
N.D.
-0.1
-5.4
+0.1
-0.6
carbon source
L-Proline (C)
N.D.
-0.0
-4.6
+0.0
-1.1
carbon source
succinate (C)
N.D.
-0.1
-4.8
-0.1
+0.1
carbon source
L-Tryptophan (C)
N.D.
-0.2
-4.6
-0.0
-0.1
carbon source
D-Lactate (C)
N.D.
-0.2
-4.5
-0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.2
-2.8
-0.3
-1.3
nitrogen source
L-Asparagine (N)
N.D.
+0.2
-4.7
-0.1
+0.2
nitrogen source
L-Tryptophan (N)
N.D.
+0.1
-4.1
-0.0
-0.3
carbon source
Octanoic (C)
N.D.
-0.3
-3.0
+0.1
-1.2
nitrogen source
L-Phenylalanine (N)
N.D.
-0.1
-4.2
+0.0
+0.1
carbon source
L-Asparagine (C)
N.D.
+0.0
-4.1
-0.2
+0.2
carbon source
Heptanoic (C)
N.D.
-0.1
-3.1
+0.0
-1.0
nitrogen source
nitrite (N)
N.D.
-0.2
-3.5
+0.0
-0.3
carbon source
L-Asparagine (C)
N.D.
+0.0
-4.0
+0.1
-0.2
nitrogen source
L-Leucine (N)
N.D.
+0.1
-4.3
-0.0
+0.2
nitrogen source
L-Glutamine (N)
N.D.
+0.1
-4.3
+0.2
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.3
-2.7
-0.7
-0.3
carbon source
L-Phenylalanine (C)
N.D.
-0.1
-3.7
-0.2
+0.1
carbon source
D-Lactate (C)
N.D.
+0.2
-4.4
+0.1
+0.2
nitrogen source
L-Valine (N)
N.D.
-0.1
-3.8
-0.1
-0.0
carbon source
L-Glutamine (C)
N.D.
+0.1
-3.9
-0.1
+0.1
nitrogen source
casaminos (N)
N.D.
-0.0
-4.0
+0.0
+0.3
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
+0.0
-3.9
+0.0
+0.1
carbon source
Octanoic (C)
N.D.
+0.1
-3.1
+0.1
-0.8
carbon source
D,L-Lactate (C)
N.D.
+0.1
-4.0
+0.0
+0.3
nitrogen source
D-Alanine (N)
N.D.
-0.1
-3.5
+0.2
-0.2
carbon source
L-Lactate (C)
N.D.
+0.2
-3.8
-0.1
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
+0.1
-3.9
-0.1
+0.4
carbon source
L-Leucine (C)
N.D.
-0.3
-3.6
-0.0
+0.4
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