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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04375 and RR42_RS04380 are separated by 85 nucleotides
RR42_RS04380 and RR42_RS04385 are separated by 137 nucleotides
RR42_RS04385 and RR42_RS04390 are separated by 104 nucleotides
RR42_RS04390 and RR42_RS04395 are separated by 167 nucleotides
RR42_RS04375: RR42_RS04375 - magnesium transporter, at 973,188 to 974,501
_RS04375
RR42_RS04380: RR42_RS04380 - LysR family transcriptional regulator, at 974,587 to 975,540
_RS04380
RR42_RS04385: RR42_RS04385 - amino acid dehydrogenase, at 975,678 to 976,940
_RS04385
RR42_RS04390: RR42_RS04390 - ABC transporter, at 977,045 to 977,965
_RS04390
RR42_RS04395: RR42_RS04395 - cysteine ABC transporter substrate-binding protein, at 978,133 to 978,930
_RS04395
Group
Condition
RR42
_RS04375
RR42
_RS04380
RR42
_RS04385
RR42
_RS04390
RR42
_RS04395
lb
LB
-5.1
+0.1
+0.5
+0.1
+0.3
nitrogen source
L-Citrulline (N)
-1.7
-0.1
-0.1
+0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-1.6
-0.1
-0.2
-0.1
stress
R2A with Chloride 300 mM
-1.6
+0.0
+0.1
-0.1
+0.0
stress
R2A with Chloride 300 mM
-1.0
-0.1
+0.0
-0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
-0.8
-0.2
+0.3
-0.2
carbon source
Suberic (C)
+0.0
-0.4
-0.3
-0.3
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.3
-0.4
-0.1
-0.5
-0.4
carbon source
propionate (C)
-0.2
-0.5
+0.0
-0.1
-0.3
carbon source
Dodecandioic (C)
-0.1
-0.6
+0.0
-0.3
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.4
-0.2
+0.1
-0.4
carbon source
adipate (C)
+0.2
-0.4
-0.1
-0.2
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.7
+0.1
-0.1
+0.2
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
+0.1
-0.4
+0.3
+0.2
carbon source
L-Leucine (C)
+0.3
-0.2
-0.1
+0.1
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
-0.0
-0.4
+0.2
+0.1
carbon source
Suberic (C)
+0.4
-0.5
+0.2
-0.1
-0.3
nitrogen source
L-Glutamine (N)
+0.2
+0.2
-0.0
+0.2
-0.7
nitrogen source
L-Tryptophan (N)
-0.3
+0.5
+0.0
-0.1
-0.2
carbon source
L-Histidine (C)
-0.2
+0.6
-0.0
+0.0
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.1
-0.0
+0.2
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.7
+0.2
+0.0
+0.5
nitrogen source
L-Asparagine (N)
-0.3
+0.5
-0.1
+0.4
-0.1
carbon source
L-Histidine (C)
-0.7
+0.2
+0.2
+0.4
+0.3
stress
R2A with nitrate 200 mM
-0.1
+0.4
+0.0
+0.4
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
+0.5
+0.1
+0.1
+0.2
carbon source
L-Proline (C)
+0.1
+0.7
-0.1
-0.2
+0.2
carbon source
pyruvate (C)
+0.5
+0.5
+0.1
-0.1
-0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.0
+0.7
+0.1
+0.3
-0.2
carbon source
L-Threonine (C)
+0.3
+0.6
+0.1
-0.1
+0.0
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