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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04350 and RR42_RS04355 are separated by 116 nucleotides
RR42_RS04355 and RR42_RS04360 are separated by 157 nucleotides
RR42_RS04360 and RR42_RS04365 are separated by 78 nucleotides
RR42_RS04365 and RR42_RS04370 are separated by 247 nucleotides
RR42_RS04350: RR42_RS04350 - ABC transporter ATP-binding protein, at 966,855 to 967,916
_RS04350
RR42_RS04355: RR42_RS04355 - recombination factor protein RarA, at 968,033 to 969,400
_RS04355
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
RR42_RS04365: RR42_RS04365 - tRNA-Ser, at 970,950 to 971,039
_RS04365
RR42_RS04370: RR42_RS04370 - hypothetical protein, at 971,287 to 972,186
_RS04370
Group
Condition
RR42
_RS04350
RR42
_RS04355
RR42
_RS04360
RR42
_RS04365
RR42
_RS04370
stress
R2A with Cobalt chloride 0.3 mM
-1.0
-0.5
N.D.
N.D.
-0.4
carbon source
D,L-Lactate (C)
-1.3
-0.1
N.D.
N.D.
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.4
-0.9
N.D.
N.D.
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.3
N.D.
N.D.
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.9
-0.3
N.D.
N.D.
+0.1
carbon source
Pimelic (C)
-1.0
+0.0
N.D.
N.D.
-0.0
r2a
R2A
-0.9
-0.2
N.D.
N.D.
+0.1
carbon source
Hexanoic (C)
-0.8
-0.0
N.D.
N.D.
-0.1
carbon source
Pimelic (C)
-0.7
-0.3
N.D.
N.D.
+0.1
carbon source
Suberic (C)
-0.8
-0.0
N.D.
N.D.
-0.1
carbon source
adipate (C)
-0.8
-0.1
N.D.
N.D.
+0.0
carbon source
Azelaic (C)
-0.9
+0.2
N.D.
N.D.
-0.2
carbon source
adipate (C)
-0.7
-0.2
N.D.
N.D.
+0.1
stress
R2A with Bacitracin 0.5 mg/ml
-0.8
+0.0
N.D.
N.D.
+0.0
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.8
+0.1
N.D.
N.D.
-0.0
lb
LB
-0.9
+0.2
N.D.
N.D.
+0.1
r2a
R2A
-0.7
+0.1
N.D.
N.D.
+0.1
carbon source
Disodium Glutarate (C)
-0.7
-0.0
N.D.
N.D.
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
-0.2
N.D.
N.D.
+0.2
carbon source
Protocatechuic Acid (C)
-1.0
+0.6
N.D.
N.D.
-0.1
carbon source
propionate (C)
-0.6
-0.1
N.D.
N.D.
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.3
-0.5
N.D.
N.D.
-0.1
nitrogen source
L-Tryptophan (N)
-0.5
+0.2
N.D.
N.D.
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
-0.5
N.D.
N.D.
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.9
-0.3
N.D.
N.D.
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.7
-0.2
N.D.
N.D.
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.7
-0.0
N.D.
N.D.
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.5
N.D.
N.D.
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.5
N.D.
N.D.
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
+0.2
N.D.
N.D.
+0.0
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