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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04320 and RR42_RS04325 are separated by 133 nucleotides
RR42_RS04325 and RR42_RS04330 are separated by 23 nucleotides
RR42_RS04330 and RR42_RS04335 are separated by 236 nucleotides
RR42_RS04335 and RR42_RS04340 are separated by 201 nucleotides
RR42_RS04320: RR42_RS04320 - cell division protein FtsK, at 959,088 to 961,412
_RS04320
RR42_RS04325: RR42_RS04325 - membrane protein, at 961,546 to 962,184
_RS04325
RR42_RS04330: RR42_RS04330 - lipoprotein, at 962,208 to 962,612
_RS04330
RR42_RS04335: RR42_RS04335 - iron deficiency-induced protein A, at 962,849 to 963,892
_RS04335
RR42_RS04340: RR42_RS04340 - hypothetical protein, at 964,094 to 964,774
_RS04340
Group
Condition
RR42
_RS04320
RR42
_RS04325
RR42
_RS04330
RR42
_RS04335
RR42
_RS04340
stress
R2A with Vancomycin 0.5 mg/ml
-2.6
-5.0
N.D.
-0.2
-0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.9
-5.6
N.D.
+0.2
-0.0
stress
R2A with copper (II) chloride 0.25 mM
-2.7
-3.7
N.D.
+0.3
-0.1
lb
LB
-3.6
-1.6
N.D.
-0.3
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-1.5
-3.7
N.D.
+0.0
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
-5.5
N.D.
+0.0
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
-1.0
-3.7
N.D.
-0.3
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.8
-3.3
N.D.
-0.0
-0.8
stress
R2A with nitrate 150 mM
-1.9
-2.7
N.D.
-0.0
-0.2
stress
R2A with Nickel (II) chloride 0.25 mM
-1.2
-2.7
N.D.
-0.3
+0.3
stress
R2A with Chloride 300 mM
-1.0
-2.4
N.D.
-0.2
+0.0
stress
R2A with Sisomicin 0.035 mg/ml
-0.4
-3.3
N.D.
+0.3
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.7
-2.4
N.D.
-0.4
-0.0
stress
R2A with nitrate 200 mM
-1.2
-2.5
N.D.
-0.0
+0.1
nitrogen source
D-Alanine (N)
-2.4
-0.7
N.D.
-0.2
-0.0
carbon source
Trisodium citrate (C)
-0.8
-1.9
N.D.
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.8
-1.7
N.D.
-0.5
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.7
-3.0
N.D.
+0.3
+0.6
nitrogen source
Glycine (N)
-2.9
+0.1
N.D.
+0.2
+0.0
temperature
R2A 23C
-0.2
-1.8
N.D.
-0.2
-0.4
carbon source
Heptanoic (C)
-0.3
-2.2
N.D.
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-1.1
-1.8
N.D.
+0.0
+0.4
nitrogen source
L-Lysine (N)
-1.4
-0.9
N.D.
-0.0
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-1.9
N.D.
+0.2
-0.5
nitrogen source
Glucuronamide (N)
-2.2
-0.1
N.D.
-0.1
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.4
-0.9
N.D.
+0.3
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-1.5
-0.4
N.D.
-0.1
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-2.0
N.D.
-0.2
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-1.6
-0.9
N.D.
-0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.1
+0.8
N.D.
-0.1
+0.3
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