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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04245 and RR42_RS04250 are separated by 26 nucleotides
RR42_RS04250 and RR42_RS04255 are separated by 66 nucleotides
RR42_RS04255 and RR42_RS04260 are separated by 87 nucleotides
RR42_RS04260 and RR42_RS04265 are separated by 85 nucleotides
RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042
_RS04245
RR42_RS04250: RR42_RS04250 - chemotaxis protein CheY, at 940,069 to 940,437
_RS04250
RR42_RS04255: RR42_RS04255 - chemotaxis protein CheW, at 940,504 to 941,091
_RS04255
RR42_RS04260: RR42_RS04260 - chemotaxis protein, at 941,179 to 943,347
_RS04260
RR42_RS04265: RR42_RS04265 - chemotaxis protein CheY, at 943,433 to 949,480
_RS04265
Group
Condition
RR42
_RS04245
RR42
_RS04250
RR42
_RS04255
RR42
_RS04260
RR42
_RS04265
nitrogen source
casaminos (N)
-2.0
-0.8
-0.9
-0.4
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.7
-0.1
-1.1
-0.7
-0.3
nitrogen source
L-Serine (N)
-1.3
-1.2
-0.5
-0.4
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.8
-0.2
-0.7
-0.7
-0.2
carbon source
Protocatechuic Acid (C)
-0.3
-1.2
-1.6
-0.2
-0.1
lb
LB
-1.5
-1.8
+1.0
-0.8
-0.3
carbon source
Azelaic (C)
-0.6
-0.7
-1.5
-0.5
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.6
-0.5
-0.3
-1.5
-0.5
stress
R2A with Cephalothin 0.25 mg/ml
-1.2
+0.4
-1.7
+0.3
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
-0.7
-0.5
-0.8
-0.3
nitrogen source
nitrite (N)
-0.3
-0.9
+0.6
-0.7
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
-0.5
+0.4
-1.2
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.7
-0.2
-0.8
-0.6
-0.4
stress
R2A with nitrate 150 mM
+0.1
+0.4
-1.6
+0.2
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.0
+0.2
-0.3
-0.9
-0.3
carbon source
Hexanoic (C)
+0.2
+0.6
-1.4
+0.2
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-1.1
-0.5
-0.0
+1.2
+0.8
carbon source
adipate (C)
-1.3
+0.8
-0.3
+1.1
+0.7
stress
R2A with Lomefloxacin 0.00075 mM
-0.8
+0.7
+0.1
+0.7
+0.4
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
+0.3
-0.5
+0.6
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
+1.4
-3.0
+1.9
+1.6
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+1.2
+0.1
+0.6
+0.5
stress
R2A with sodium fluoride 100 mM
+0.6
+0.7
-0.2
+0.7
+0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.5
+0.2
+0.8
+0.6
+0.3
carbon source
adipate (C)
+0.2
+1.3
-0.6
+1.2
+0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+1.3
-1.3
+2.4
+1.2
stress
R2A with Nickel (II) chloride 0.25 mM
+1.3
+0.8
-0.3
+0.8
+0.9
stress
R2A with Nickel (II) chloride 0.35 mM
+0.9
+1.2
-0.0
+1.4
+1.2
stress
R2A with Cobalt chloride 0.3 mM
+0.4
+1.1
+1.3
+1.5
+1.6
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
+3.2
+0.1
+3.0
+2.9
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RR42_RS04250
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RR42_RS04255
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RR42_RS04260
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RR42_RS04265
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