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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04235 and RR42_RS04240 are separated by 215 nucleotides
RR42_RS04240 and RR42_RS04245 are separated by 446 nucleotides
RR42_RS04245 and RR42_RS04250 are separated by 26 nucleotides
RR42_RS04250 and RR42_RS04255 are separated by 66 nucleotides
RR42_RS04235: RR42_RS04235 - glutamate-1-semialdehyde aminotransferase, at 937,426 to 938,715
_RS04235
RR42_RS04240: RR42_RS04240 - rubredoxin, at 938,931 to 939,101
_RS04240
RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042
_RS04245
RR42_RS04250: RR42_RS04250 - chemotaxis protein CheY, at 940,069 to 940,437
_RS04250
RR42_RS04255: RR42_RS04255 - chemotaxis protein CheW, at 940,504 to 941,091
_RS04255
Group
Condition
RR42
_RS04235
RR42
_RS04240
RR42
_RS04245
RR42
_RS04250
RR42
_RS04255
nitrogen source
casaminos (N)
N.D.
N.D.
-2.0
-0.8
-0.9
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
-0.3
-1.2
-1.6
nitrogen source
L-Serine (N)
N.D.
N.D.
-1.3
-1.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
-1.7
-0.1
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
-1.8
-0.2
-0.7
carbon source
Azelaic (C)
N.D.
N.D.
-0.6
-0.7
-1.5
stress
R2A with Cephalothin 0.25 mg/ml
N.D.
N.D.
-1.2
+0.4
-1.7
lb
LB
N.D.
N.D.
-1.5
-1.8
+1.0
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
-0.1
-0.9
-1.0
carbon source
Valeric (C)
N.D.
N.D.
+0.0
-0.5
-1.1
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
+0.1
+1.4
-3.0
nitrogen source
Glucuronamide (N)
N.D.
N.D.
-1.1
-0.5
+0.1
carbon source
Suberic (C)
N.D.
N.D.
+0.4
-0.2
-1.4
stress
R2A with nitrate 150 mM
N.D.
N.D.
+0.1
+0.4
-1.6
carbon source
adipate (C)
N.D.
N.D.
-1.3
+0.8
-0.3
carbon source
Hexanoic (C)
N.D.
N.D.
+0.2
+0.6
-1.4
nitrogen source
nitrite (N)
N.D.
N.D.
-0.3
-0.9
+0.6
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
-0.4
+1.3
-1.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
N.D.
+0.7
-0.2
-0.8
carbon source
Octanoic (C)
N.D.
N.D.
-1.0
+0.6
+0.1
carbon source
Heptanoic (C)
N.D.
N.D.
-0.9
+0.0
+0.7
temperature
R2A 23C
N.D.
N.D.
-0.9
+0.3
+0.7
nitrogen source
L-Citrulline (N)
N.D.
N.D.
-0.8
-0.1
+1.1
stress
R2A with Chlorite 4 mM
N.D.
N.D.
+0.6
+0.6
-0.7
carbon source
adipate (C)
N.D.
N.D.
+0.2
+1.3
-0.6
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
-0.4
+0.1
+1.5
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
+1.3
+0.8
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
+0.9
+1.2
-0.0
stress
R2A with Cobalt chloride 0.3 mM
N.D.
N.D.
+0.4
+1.1
+1.3
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
N.D.
+0.1
+3.2
+0.1
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RR42_RS04245
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