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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04225 and RR42_RS04230 are separated by 426 nucleotides
RR42_RS04230 and RR42_RS04235 are separated by 788 nucleotides
RR42_RS04235 and RR42_RS04240 are separated by 215 nucleotides
RR42_RS04240 and RR42_RS04245 are separated by 446 nucleotides
RR42_RS04225: RR42_RS04225 - hypothetical protein, at 934,682 to 935,302
_RS04225
RR42_RS04230: RR42_RS04230 - dihydrodipicolinate synthase, at 935,729 to 936,637
_RS04230
RR42_RS04235: RR42_RS04235 - glutamate-1-semialdehyde aminotransferase, at 937,426 to 938,715
_RS04235
RR42_RS04240: RR42_RS04240 - rubredoxin, at 938,931 to 939,101
_RS04240
RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042
_RS04245
Group
Condition
RR42
_RS04225
RR42
_RS04230
RR42
_RS04235
RR42
_RS04240
RR42
_RS04245
nitrogen source
casaminos (N)
-0.3
-0.2
N.D.
N.D.
-2.0
lb
LB
-0.8
+0.4
N.D.
N.D.
-1.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.0
N.D.
N.D.
-1.7
temperature
R2A 37C
-2.0
-0.1
N.D.
N.D.
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.1
N.D.
N.D.
-1.8
stress
R2A with Cephalothin 0.25 mg/ml
-0.4
-0.1
N.D.
N.D.
-1.2
nitrogen source
L-Serine (N)
-0.3
+0.0
N.D.
N.D.
-1.3
temperature
R2A 23C
-0.3
-0.3
N.D.
N.D.
-0.9
carbon source
adipate (C)
-0.0
-0.1
N.D.
N.D.
-1.3
nitrogen source
Glucuronamide (N)
+0.0
-0.3
N.D.
N.D.
-1.1
nitrogen source
L-Citrulline (N)
-0.2
-0.4
N.D.
N.D.
-0.8
carbon source
D,L-Lactate (C)
-0.2
-0.0
N.D.
N.D.
-1.1
carbon source
Disodium Glutarate (C)
-0.1
-0.5
N.D.
N.D.
-0.6
nitrogen source
L-Threonine (N)
-0.2
-0.1
N.D.
N.D.
-0.9
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.3
N.D.
N.D.
-1.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.3
+0.1
N.D.
N.D.
-0.8
carbon source
Octanoic (C)
+0.2
-0.0
N.D.
N.D.
-1.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.2
N.D.
N.D.
-0.9
carbon source
Heptanoic (C)
+0.1
-0.0
N.D.
N.D.
-0.9
carbon source
Octanoic (C)
+0.1
+0.2
N.D.
N.D.
-1.0
carbon source
propionate (C)
+0.3
-0.3
N.D.
N.D.
-0.6
stress
R2A with Chloride 300 mM
+0.2
+0.0
N.D.
N.D.
-0.8
carbon source
Suberic (C)
-0.1
+0.5
N.D.
N.D.
-1.0
carbon source
Heptanoic (C)
+0.0
+0.6
N.D.
N.D.
-1.0
nitrogen source
L-Lysine (N)
-0.1
-0.4
N.D.
N.D.
+0.6
stress
R2A with copper (II) chloride 0.25 mM
-0.5
+0.2
N.D.
N.D.
+0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
+0.3
N.D.
N.D.
+0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.1
N.D.
N.D.
+1.0
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
+0.1
N.D.
N.D.
+1.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
+0.5
N.D.
N.D.
+0.7
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