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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04190 and RR42_RS04195 are separated by 1000 nucleotides
RR42_RS04195 and RR42_RS04200 are separated by 67 nucleotides
RR42_RS04200 and RR42_RS04205 are separated by 66 nucleotides
RR42_RS04205 and RR42_RS04210 are separated by 173 nucleotides
RR42_RS04190: RR42_RS04190 - hypothetical protein, at 926,604 to 927,563
_RS04190
RR42_RS04195: RR42_RS04195 - membrane protein, at 928,564 to 929,661
_RS04195
RR42_RS04200: RR42_RS04200 - peptidase M48, at 929,729 to 930,889
_RS04200
RR42_RS04205: RR42_RS04205 - glycine cleavage system regulatory protein, at 930,956 to 931,843
_RS04205
RR42_RS04210: RR42_RS04210 - membrane protein, at 932,017 to 933,306
_RS04210
Group
Condition
RR42
_RS04190
RR42
_RS04195
RR42
_RS04200
RR42
_RS04205
RR42
_RS04210
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
+0.1
+0.5
-4.3
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.0
+0.5
-4.2
+0.1
r2a
R2A
-0.2
+0.0
-0.3
-2.6
+0.1
carbon source
Suberic (C)
+0.0
-0.1
-0.1
-2.0
-0.1
temperature
R2A 23C
-0.1
-0.2
-0.2
-1.6
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.1
+0.0
-1.8
-0.3
nitrogen source
L-Glutamine (N)
+0.2
-0.3
+0.1
-1.4
-0.5
nitrogen source
L-Serine (N)
-0.2
-0.2
-0.1
-1.3
-0.1
temperature
R2A 37C
-0.0
-0.1
-0.3
-0.9
-0.3
nitrogen source
L-Leucine (N)
+0.1
+0.1
-0.1
-1.6
+0.0
stress
R2A with Bacitracin 0.5 mg/ml
-0.2
-0.2
-0.1
-0.8
-0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.0
-0.3
+0.1
-1.2
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.6
+0.2
-0.7
-0.3
nitrogen source
L-Valine (N)
+0.0
+0.2
-0.2
-1.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.0
+0.4
-1.7
+0.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.0
-0.2
-1.0
+0.0
stress
R2A with Sisomicin 0.035 mg/ml
-0.2
-0.4
-0.2
-0.4
+0.1
carbon source
a-Ketoglutaric (C)
-0.2
-0.2
+0.2
-0.7
-0.0
carbon source
Hexanoic (C)
+0.0
+0.1
-0.0
-1.0
-0.1
carbon source
L-Glutamine (C)
-0.1
+0.1
+0.4
-1.3
-0.0
carbon source
Disodium Glutarate (C)
-0.1
+0.1
+0.3
-1.1
+0.1
carbon source
L-Asparagine (C)
-0.1
-0.1
+0.5
-0.9
-0.2
carbon source
a-Ketoglutaric (C)
+0.0
+0.1
+0.2
-0.9
-0.1
carbon source
L-Proline (C)
-0.1
-0.1
+0.5
-0.9
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.2
+0.1
-1.0
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
+0.2
-0.2
+1.0
-0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.1
-0.2
+0.6
+0.5
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
+0.1
+0.0
+1.0
+0.1
carbon source
propionate (C)
-0.0
+0.2
+0.4
+0.6
-0.0
carbon source
D-Lactate (C)
+0.0
+0.2
+0.2
+1.0
-0.0
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