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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS04055 and RR42_RS04060 are separated by 593 nucleotides
RR42_RS04060 and RR42_RS04065 are separated by 148 nucleotides
RR42_RS04065 and RR42_RS04070 overlap by 4 nucleotides
RR42_RS04070 and RR42_RS04075 are separated by 526 nucleotides
RR42_RS04055: RR42_RS04055 - hypothetical protein, at 898,284 to 898,745
_RS04055
RR42_RS04060: RR42_RS04060 - hypothetical protein, at 899,339 to 899,554
_RS04060
RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566
_RS04065
RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567
_RS04070
RR42_RS04075: RR42_RS04075 - molecular chaperone GroES, at 902,094 to 902,384
_RS04075
Group
Condition
RR42
_RS04055
RR42
_RS04060
RR42
_RS04065
RR42
_RS04070
RR42
_RS04075
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
-1.6
-0.4
-0.3
N.D.
carbon source
L-Histidine (C)
-0.3
-1.7
-0.1
+0.1
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
-1.1
-0.5
-0.3
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.7
-0.9
-0.0
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.8
-1.3
+0.3
+0.1
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.4
-0.5
-0.4
-0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.8
-0.8
-0.1
N.D.
carbon source
L-Proline (C)
-1.2
-0.2
+0.0
+0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
-0.4
-0.2
+0.3
N.D.
carbon source
D-Gluconic Acid (C)
-0.4
-0.9
-0.1
+0.3
N.D.
carbon source
Valeric (C)
+0.6
-0.1
-1.3
-0.2
N.D.
carbon source
L-Malic (C)
+0.3
-0.9
-0.3
+0.0
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
-1.6
+0.6
+0.1
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.8
+0.4
-0.0
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-1.0
-0.1
+0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.8
-0.1
-0.3
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
+0.3
-0.1
-0.7
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.4
-0.6
+0.4
-0.2
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.7
+0.4
+0.2
+0.3
N.D.
lb
LB
+1.7
-1.2
-0.4
+0.2
N.D.
carbon source
Hexanoic (C)
-0.2
+0.9
-0.4
+0.1
N.D.
carbon source
adipate (C)
+0.5
+1.1
-0.5
-0.4
N.D.
carbon source
adipate (C)
+0.5
+0.8
-0.3
-0.1
N.D.
carbon source
D,L-Lactate (C)
+0.9
-0.3
+0.4
-0.0
N.D.
stress
R2A with Chloride 300 mM
-0.4
+1.1
+0.4
+0.1
N.D.
carbon source
Suberic (C)
+0.5
+1.3
-0.5
+0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.2
-0.1
+0.2
+0.2
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.4
+0.7
-0.0
N.D.
nitrogen source
L-Isoleucine (N)
+0.6
+0.5
+0.3
+0.3
N.D.
carbon source
Disodium Glutarate (C)
+1.2
+0.8
+0.4
+0.0
N.D.
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