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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03980 and RR42_RS03985 are separated by 28 nucleotides
RR42_RS03985 and RR42_RS03990 are separated by 274 nucleotides
RR42_RS03990 and RR42_RS03995 are separated by 577 nucleotides
RR42_RS03995 and RR42_RS04000 are separated by 631 nucleotides
RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251
_RS03980
RR42_RS03985: RR42_RS03985 - histidine kinase, at 879,280 to 881,196
_RS03985
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt
(from data)
, at 881,471 to 882,781
_RS03990
RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721
_RS03995
RR42_RS04000: RR42_RS04000 - (2Fe-2S)-binding protein, at 887,353 to 887,811
_RS04000
Group
Condition
RR42
_RS03980
RR42
_RS03985
RR42
_RS03990
RR42
_RS03995
RR42
_RS04000
lb
LB
-3.2
-2.3
-2.5
-0.0
+0.1
carbon source
L-Asparagine (C)
-1.4
-1.1
-1.4
-0.2
+0.0
carbon source
L-Asparagine (C)
-1.5
-1.3
-1.2
-0.2
+0.2
carbon source
L-Glutamine (C)
-0.5
-0.5
-0.5
+0.0
+0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.9
+0.1
+0.0
-0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.6
-0.2
-0.5
-0.1
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.3
+0.4
-0.0
-1.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-0.2
-0.5
+0.4
+0.9
carbon source
Protocatechuic Acid (C)
+0.7
-0.2
-0.6
+0.3
+0.2
carbon source
Suberic (C)
+0.7
-0.6
+0.4
+0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
+0.3
+0.6
+0.1
-0.6
nitrogen source
L-Citrulline (N)
-0.4
+0.6
+0.2
-0.1
+0.5
stress
R2A with nitrate 150 mM
+0.9
+0.1
+0.3
-0.1
-0.3
nitrogen source
L-Leucine (N)
-0.2
+0.3
+0.8
-0.1
+0.6
stress
R2A with copper (II) chloride 0.25 mM
+0.8
+0.4
+0.9
+0.2
-0.9
nitrogen source
L-Leucine (N)
+0.6
-0.3
+0.4
+0.0
+0.6
nitrogen source
L-Tryptophan (N)
+0.7
+0.3
+0.5
-0.2
+0.2
stress
R2A with Nickel (II) chloride 0.25 mM
+0.9
-0.1
+0.5
+0.2
+0.2
nitrogen source
L-Serine (N)
+1.1
+0.4
+0.4
-0.2
+0.1
nitrogen source
D-Alanine (N)
+1.0
+0.2
+0.4
-0.1
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.7
+0.5
+0.4
+0.1
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.9
+0.5
+0.7
+0.0
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+1.8
+0.5
+0.3
+0.0
-0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+1.0
+0.6
+0.7
-0.1
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
+1.0
+0.8
-0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.5
+0.8
+0.4
-0.0
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+1.2
+0.7
+1.0
-0.0
+0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+1.4
+0.7
+0.9
+0.0
+0.2
nitrogen source
L-Glutamine (N)
+1.4
+1.7
+1.5
+0.0
-0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+2.1
+1.1
+1.7
-0.0
+0.2
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