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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03960 and RR42_RS03965 are separated by 186 nucleotides
RR42_RS03965 and RR42_RS03970 are separated by 699 nucleotides
RR42_RS03970 and RR42_RS03975 are separated by 7 nucleotides
RR42_RS03975 and RR42_RS03980 are separated by 414 nucleotides
RR42_RS03960: RR42_RS03960 - ornithine cyclodeaminase, at 873,560 to 874,636
_RS03960
RR42_RS03965: RR42_RS03965 - DNA-binding protein, at 874,823 to 875,425
_RS03965
RR42_RS03970: RR42_RS03970 - glycosyl transferase family 2, at 876,125 to 876,940
_RS03970
RR42_RS03975: RR42_RS03975 - acetyltransferase, at 876,948 to 877,514
_RS03975
RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251
_RS03980
Group
Condition
RR42
_RS03960
RR42
_RS03965
RR42
_RS03970
RR42
_RS03975
RR42
_RS03980
lb
LB
+0.2
-0.2
-0.6
-0.4
-3.2
nitrogen source
L-Citrulline (N)
-3.1
-0.1
-0.1
-0.0
-0.4
carbon source
L-Asparagine (C)
-0.2
-0.3
+0.1
-0.2
-1.4
carbon source
Protocatechuic Acid (C)
-0.3
+0.2
-0.3
-0.3
-0.7
carbon source
L-Asparagine (C)
+0.0
+0.0
+0.2
-0.0
-1.5
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
-0.4
-0.4
+0.0
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.9
+0.3
-0.2
+0.5
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.4
-0.1
+0.0
-0.1
-0.7
carbon source
L-Leucine (C)
-0.4
-0.4
+0.2
-0.1
+0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
+0.0
-0.2
-0.3
+0.6
carbon source
L-Proline (C)
-0.1
-0.7
+0.0
+0.2
+0.7
carbon source
succinate (C)
-0.5
-0.2
+0.3
+0.0
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.3
-0.2
-0.0
+0.8
nitrogen source
L-Serine (N)
-0.2
+0.0
-0.1
-0.2
+1.1
nitrogen source
D-Alanine (N)
-0.3
-0.3
+0.1
+0.1
+1.0
carbon source
Protocatechuic Acid (C)
+0.2
+0.2
+0.2
-0.6
+0.7
carbon source
D-Lactate (C)
-0.1
-0.2
-0.0
+0.1
+1.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-0.0
+0.2
-0.3
+0.9
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.2
-0.4
-0.5
+1.8
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
-0.2
-0.0
+0.2
+0.9
stress
R2A with copper (II) chloride 0.25 mM
-0.1
-0.2
+0.3
+0.2
+0.8
carbon source
D,L-Lactate (C)
+0.1
-0.2
+0.3
+0.3
+0.6
stress
R2A with nitrate 150 mM
+0.0
-0.1
+0.2
+0.1
+0.9
carbon source
L-Phenylalanine (C)
+0.1
-0.2
+0.1
+0.2
+0.9
nitrogen source
L-Glutamine (N)
-0.3
+0.0
+0.3
-0.2
+1.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.1
+0.2
-0.2
+1.2
carbon source
Suberic (C)
+0.4
-0.3
+0.4
+0.3
+0.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.1
-0.2
+0.2
+1.5
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.3
-0.1
+0.3
-0.1
+1.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.2
-0.1
+0.1
+0.1
+2.1
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