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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03935 and RR42_RS03940 are separated by 66 nucleotides
RR42_RS03940 and RR42_RS03945 are separated by 181 nucleotides
RR42_RS03945 and RR42_RS03950 are separated by 17 nucleotides
RR42_RS03950 and RR42_RS03955 are separated by 208 nucleotides
RR42_RS03935: RR42_RS03935 - purine permease, at 867,507 to 868,805
_RS03935
RR42_RS03940: RR42_RS03940 - membrane protein, at 868,872 to 870,041
_RS03940
RR42_RS03945: RR42_RS03945 - chloride channel protein, at 870,223 to 871,962
_RS03945
RR42_RS03950: RR42_RS03950 - AsnC family transcriptional regulator, at 871,980 to 872,402
_RS03950
RR42_RS03955: RR42_RS03955 - amidinotransferase, at 872,611 to 873,510
_RS03955
Group
Condition
RR42
_RS03935
RR42
_RS03940
RR42
_RS03945
RR42
_RS03950
RR42
_RS03955
nitrogen source
L-Citrulline (N)
-0.1
-1.8
-0.2
N.D.
-4.8
nitrogen source
nitrite (N)
-0.3
-2.9
-0.3
N.D.
-0.0
carbon source
L-Asparagine (C)
+0.1
-2.3
-0.4
N.D.
-0.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
-1.9
-0.3
N.D.
-0.1
stress
R2A with Cobalt chloride 0.3 mM
+0.0
-1.2
-0.5
N.D.
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-1.6
-0.1
N.D.
-0.1
nitrogen source
L-Serine (N)
-0.3
-1.2
-0.3
N.D.
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
-1.1
-0.2
N.D.
-0.2
carbon source
Valeric (C)
-0.1
-0.9
-0.0
N.D.
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-1.0
-0.2
N.D.
-0.3
carbon source
Pimelic (C)
-0.1
-0.7
-0.3
N.D.
+0.2
nitrogen source
L-Isoleucine (N)
-0.1
-1.1
+0.2
N.D.
+0.1
nitrogen source
L-Leucine (N)
+0.1
-1.1
+0.3
N.D.
-0.1
carbon source
L-Tryptophan (C)
+0.5
-1.1
-0.2
N.D.
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
-1.1
+0.1
N.D.
+0.0
nitrogen source
L-Leucine (N)
+0.2
-0.8
-0.2
N.D.
+0.2
stress
R2A with Zinc 0.1 mM
+0.4
-0.8
-0.1
N.D.
+0.0
nitrogen source
casaminos (N)
+0.5
-1.0
+0.1
N.D.
+0.2
nitrogen source
L-Tryptophan (N)
+0.3
-0.9
+0.5
N.D.
-0.0
carbon source
adipate (C)
-0.3
+0.8
-0.3
N.D.
-0.0
carbon source
L-Alanine (C)
-0.4
+0.9
-0.4
N.D.
+0.1
r2a
R2A
+0.5
-0.5
+0.4
N.D.
-0.1
lb
LB
-0.6
+1.8
-0.8
N.D.
+0.1
carbon source
Suberic (C)
+0.2
+0.8
-0.2
N.D.
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.3
+0.6
+0.3
N.D.
-0.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.9
-0.2
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
+0.5
+0.7
-0.3
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.9
+0.4
N.D.
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+1.4
+0.0
N.D.
-0.0
carbon source
pyruvate (C)
+0.1
+1.0
+0.1
N.D.
+0.2
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