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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides
RR42_RS03925 and RR42_RS03930 are separated by 119 nucleotides
RR42_RS03930 and RR42_RS03935 are separated by 141 nucleotides
RR42_RS03935 and RR42_RS03940 are separated by 66 nucleotides
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229
_RS03925
RR42_RS03930: RR42_RS03930 - (2Fe-2S)-binding protein, at 866,349 to 867,365
_RS03930
RR42_RS03935: RR42_RS03935 - purine permease, at 867,507 to 868,805
_RS03935
RR42_RS03940: RR42_RS03940 - membrane protein, at 868,872 to 870,041
_RS03940
Group
Condition
RR42
_RS03920
RR42
_RS03925
RR42
_RS03930
RR42
_RS03935
RR42
_RS03940
nitrogen source
nitrite (N)
+0.0
-1.0
-0.3
-0.3
-2.9
nitrogen source
L-Serine (N)
-1.5
-0.9
-0.0
-0.3
-1.2
carbon source
adipate (C)
-3.8
+0.3
+0.4
-0.3
+0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.9
-0.8
-0.7
+0.2
+0.9
nitrogen source
L-Citrulline (N)
-0.1
+0.3
-0.5
-0.1
-1.8
carbon source
L-Asparagine (C)
+0.3
-0.5
+0.2
+0.1
-2.3
carbon source
Protocatechuic Acid (C)
-0.4
-1.9
-0.1
-0.3
+0.6
carbon source
Carbon source D,L-Lactate 10 mM
-1.3
+1.0
+0.2
+0.2
-1.9
carbon source
L-Tryptophan (C)
-0.2
-0.1
-0.8
+0.5
-1.1
carbon source
propionate (C)
-1.0
-0.8
-0.1
-0.0
+0.4
stress
R2A with Cobalt chloride 0.5 mM
+1.1
-1.1
-1.7
+0.1
+0.1
nitrogen source
Glucuronamide (N)
-0.9
+0.3
-0.3
+0.2
-0.7
carbon source
Heptanoic (C)
-0.9
-0.9
+0.4
-0.2
+0.2
carbon source
Valeric (C)
-0.4
-0.6
+0.7
-0.1
-0.9
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
-1.0
-0.4
+0.2
-0.4
carbon source
Azelaic (C)
+0.3
-2.2
+0.4
-0.1
+0.6
carbon source
L-Alanine (C)
-0.3
-0.7
+0.0
-0.4
+0.9
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.5
-0.1
+0.4
-0.1
-1.1
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.7
-1.4
+0.1
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+1.1
-0.7
-0.4
+0.4
-0.6
nitrogen source
casaminos (N)
-0.3
+0.6
+0.1
+0.5
-1.0
stress
R2A with Lomefloxacin 0.00075 mM
+0.1
+0.4
+0.4
+0.3
-1.1
stress
R2A with Chloride 300 mM
+0.9
-1.3
+0.0
+0.4
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+1.3
+0.2
+0.2
-1.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.6
+0.7
+0.2
-1.0
stress
R2A with Zinc 0.1 mM
+1.2
-0.4
+0.4
+0.4
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.9
-0.6
-0.0
+1.4
lb
LB
-0.8
+1.0
-0.1
-0.6
+1.8
stress
R2A with D-Cycloserine 0.5 mg/ml
+1.6
-0.5
-0.1
+0.3
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
+1.4
+0.6
+0.0
+0.0
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