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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03900 and RR42_RS03905 are separated by 124 nucleotides
RR42_RS03905 and RR42_RS03910 are separated by 169 nucleotides
RR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides
RR42_RS03915 and RR42_RS03920 are separated by 55 nucleotides
RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821
_RS03900
RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863
_RS03905
RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506
_RS03910
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
Group
Condition
RR42
_RS03900
RR42
_RS03905
RR42
_RS03910
RR42
_RS03915
RR42
_RS03920
carbon source
adipate (C)
+0.0
+0.1
+0.1
+0.0
-3.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.8
-0.3
+0.5
-0.2
-1.9
carbon source
L-Leucine (C)
+0.2
-0.5
-0.7
-0.1
-0.8
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.5
-1.0
-0.2
-1.1
nitrogen source
L-Valine (N)
+0.1
-0.1
-1.6
-0.2
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.6
-1.1
-0.3
+0.7
carbon source
L-Asparagine (C)
-0.0
-0.3
-1.6
+0.0
+0.3
carbon source
a-Ketoglutaric (C)
+0.2
-0.2
-0.6
-0.2
-0.8
carbon source
butyrate (C)
+0.2
-0.3
+0.2
-0.3
-1.3
nitrogen source
L-Serine (N)
-0.3
+0.2
+0.1
+0.0
-1.5
carbon source
Valeric (C)
-0.1
+0.2
-1.2
+0.2
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
+0.3
-0.9
-0.3
+0.1
carbon source
Suberic (C)
-0.2
+0.2
-0.8
+0.1
-0.6
carbon source
D,L-Lactate (C)
-0.1
+0.4
-0.3
+0.2
-1.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
-0.3
+0.5
-0.1
-1.3
nitrogen source
Glucuronamide (N)
+0.2
+0.3
-0.5
+0.2
-0.9
lb
LB
+0.6
-1.0
+0.5
+0.3
-0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.2
+0.9
-0.5
+0.6
carbon source
Ethanol (C)
+0.3
-0.5
+0.7
-0.1
+0.6
stress
R2A with Zinc 0.1 mM
-0.4
+0.3
-0.1
+0.1
+1.2
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.0
-0.3
+1.1
-0.0
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.1
+1.5
-0.0
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
-0.2
+1.1
+0.1
+1.1
stress
R2A with Cobalt chloride 0.5 mM
+0.0
-0.0
+1.2
-0.3
+1.1
carbon source
L-Glutamine (C)
+0.1
+0.5
+0.9
+0.1
+0.6
stress
R2A with Chloride 300 mM
+0.0
+0.3
+1.1
+0.1
+0.9
stress
R2A with nitrate 200 mM
+0.0
+0.4
+1.4
+0.1
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
-0.1
+1.1
+0.0
+1.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
+0.3
+1.2
-0.1
+1.6
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.7
+0.8
+0.0
+1.1
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