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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03815 and RR42_RS03820 are separated by 125 nucleotides
RR42_RS03820 and RR42_RS03825 are separated by 110 nucleotides
RR42_RS03825 and RR42_RS03830 are separated by 7 nucleotides
RR42_RS03830 and RR42_RS03835 are separated by 6 nucleotides
RR42_RS03815: RR42_RS03815 - short-chain dehydrogenase, at 843,338 to 844,117
_RS03815
RR42_RS03820: RR42_RS03820 - molybdenum cofactor biosynthesis protein MoaA, at 844,243 to 844,485
_RS03820
RR42_RS03825: RR42_RS03825 - ModE family transcriptional regulator, at 844,596 to 845,399
_RS03825
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
RR42_RS03835: RR42_RS03835 - molybdate ABC transporter permease, at 846,136 to 846,807
_RS03835
Group
Condition
RR42
_RS03815
RR42
_RS03820
RR42
_RS03825
RR42
_RS03830
RR42
_RS03835
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.6
-1.3
-3.2
-3.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.7
-1.7
-4.2
-3.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
+0.5
-1.0
-2.1
-2.1
stress
R2A with Chlorite 4 mM
-0.1
-0.0
-0.6
-1.1
-2.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.8
+0.0
-0.6
-1.4
-2.3
nitrogen source
L-Glutamine (N)
-1.1
-0.5
-0.9
-0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.5
-0.5
-1.2
-0.7
nitrogen source
nitrate (N)
-0.4
-0.6
-0.6
-0.2
-0.3
carbon source
Octanoic (C)
-0.4
-0.4
-0.3
-0.1
-0.8
nitrogen source
D-Alanine (N)
-0.9
-0.2
-0.9
+0.1
+0.2
carbon source
adipate (C)
+0.1
-0.5
+0.1
-0.7
-0.7
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.7
-0.4
-0.3
+0.5
stress
R2A with Zinc 0.1 mM
-0.3
-0.6
+0.3
-0.3
-0.3
r2a
R2A
-0.4
+0.4
-0.7
-0.2
-0.2
carbon source
Azelaic (C)
+0.3
-0.5
+0.1
-0.3
-0.5
carbon source
Azelaic (C)
+0.5
-0.0
-0.2
-0.5
-0.8
carbon source
pyruvate (C)
+0.7
-0.1
-0.7
-0.4
-0.4
stress
R2A with copper (II) chloride 0.25 mM
+0.6
-0.3
-0.4
-0.4
-0.3
carbon source
Dodecandioic (C)
+0.5
-0.8
-0.1
+0.3
-0.7
carbon source
L-Malic (C)
-0.6
+0.3
-0.2
+0.3
-0.6
carbon source
Protocatechuic Acid (C)
+0.6
-0.5
+0.3
-0.7
+0.1
carbon source
adipate (C)
+0.7
-0.2
-0.1
+0.2
-0.9
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
+0.3
-0.4
+0.3
+0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
+0.4
+0.4
-0.4
+0.5
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.7
+0.7
+0.3
+0.3
lb
LB
+1.2
+0.2
+0.5
+0.0
-0.8
carbon source
Protocatechuic Acid (C)
+0.6
+0.2
+0.9
+0.1
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.5
-0.2
+0.7
+0.2
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.2
+0.6
+0.3
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
+0.4
+0.5
+0.4
+0.2
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