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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03790 and RR42_RS03795 are separated by 139 nucleotides
RR42_RS03795 and RR42_RS03800 are separated by 22 nucleotides
RR42_RS03800 and RR42_RS03805 are separated by 73 nucleotides
RR42_RS03805 and RR42_RS03810 are separated by 283 nucleotides
RR42_RS03790: RR42_RS03790 - molybdenum cofactor biosynthesis protein MoaA, at 837,226 to 837,480
_RS03790
RR42_RS03795: RR42_RS03795 - tyrosine protein phosphatase, at 837,620 to 838,336
_RS03795
RR42_RS03800: RR42_RS03800 - acetate kinase, at 838,359 to 839,585
_RS03800
RR42_RS03805: RR42_RS03805 - phosphate acetyltransferase, at 839,659 to 840,600
_RS03805
RR42_RS03810: RR42_RS03810 - 3-hydroxyalkanoate synthetase, at 840,884 to 843,061
_RS03810
Group
Condition
RR42
_RS03790
RR42
_RS03795
RR42
_RS03800
RR42
_RS03805
RR42
_RS03810
stress
R2A with copper (II) chloride 0.25 mM
-0.3
-0.8
-0.2
N.D.
-0.1
stress
R2A with nitrate 150 mM
-0.2
-0.6
-0.1
N.D.
-0.3
nitrogen source
L-Valine (N)
-0.7
+0.1
-0.3
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
-0.8
+0.1
N.D.
-0.1
nitrogen source
nitrite (N)
-0.2
+0.3
-0.5
N.D.
+0.0
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
-0.7
N.D.
+0.1
carbon source
Hexanoic (C)
+0.3
-0.6
+0.1
N.D.
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.6
+0.6
-0.2
N.D.
-0.0
nitrogen source
L-Isoleucine (N)
-0.4
+0.3
-0.2
N.D.
+0.2
stress
R2A with Cephalothin 0.25 mg/ml
-0.2
+0.5
-0.2
N.D.
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.6
-0.1
N.D.
-0.2
carbon source
adipate (C)
+0.1
-0.6
+0.3
N.D.
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.6
+0.5
+0.1
N.D.
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.7
+0.0
N.D.
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
-0.3
-0.2
N.D.
+0.0
carbon source
Azelaic (C)
-0.1
-0.6
+0.3
N.D.
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
+0.5
-0.1
N.D.
+0.0
carbon source
L-Malic (C)
+0.1
+0.5
-0.3
N.D.
-0.2
stress
R2A with Sisomicin 0.035 mg/ml
-0.4
+0.5
+0.1
N.D.
+0.0
nitrogen source
L-Leucine (N)
-0.5
+0.5
+0.4
N.D.
-0.0
carbon source
L-Asparagine (C)
-0.2
+0.4
+0.2
N.D.
-0.2
carbon source
D,L-Lactate (C)
-0.1
+0.6
+0.2
N.D.
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.6
+0.3
N.D.
-0.2
carbon source
Valeric (C)
+0.2
+0.4
+0.3
N.D.
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
+0.4
-0.2
N.D.
-0.1
carbon source
Hexanoic (C)
+0.6
-0.2
+0.1
N.D.
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+1.1
+0.3
-0.3
N.D.
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
+0.8
+0.1
N.D.
+0.0
carbon source
Protocatechuic Acid (C)
+0.1
+0.5
+0.5
N.D.
+0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
+0.8
+0.3
N.D.
+0.1
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