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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03750 and RR42_RS03755 overlap by 4 nucleotides
RR42_RS03755 and RR42_RS03760 are separated by 88 nucleotides
RR42_RS03760 and RR42_RS03765 are separated by 2 nucleotides
RR42_RS03765 and RR42_RS03770 overlap by 4 nucleotides
RR42_RS03750: RR42_RS03750 - formate dehydrogenase, at 827,309 to 827,824
_RS03750
RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374
_RS03755
RR42_RS03760: RR42_RS03760 - formate dehydrogenase, at 829,463 to 832,318
_RS03760
RR42_RS03765: RR42_RS03765 - formate dehydrogenase, at 832,321 to 833,160
_RS03765
RR42_RS03770: RR42_RS03770 - formate dehydrogenase, at 833,157 to 833,381
_RS03770
Group
Condition
RR42
_RS03750
RR42
_RS03755
RR42
_RS03760
RR42
_RS03765
RR42
_RS03770
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.3
+0.0
-1.1
N.D.
nitrogen source
L-Tryptophan (N)
-0.2
-0.0
-0.3
-0.5
N.D.
nitrogen source
L-Tryptophan (N)
-0.4
-0.3
-0.2
+0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.4
-0.2
-0.2
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.1
+0.2
-0.0
-0.7
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.1
-0.0
-0.6
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
-0.1
-0.2
-0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.2
+0.2
-0.7
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.4
+0.3
-1.2
N.D.
carbon source
Protocatechuic Acid (C)
-0.0
+0.5
-0.1
-0.3
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
+0.1
-0.1
+0.4
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.2
+0.3
-0.1
-0.2
N.D.
nitrogen source
D-Alanine (N)
-0.1
+0.1
-0.2
+0.5
N.D.
carbon source
pyruvate (C)
+0.1
-0.3
+0.1
+0.4
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.0
+0.2
+0.6
N.D.
lb
LB
-0.1
+0.5
-0.3
+0.7
N.D.
carbon source
Pimelic (C)
+0.0
+0.3
-0.1
+0.5
N.D.
nitrogen source
L-Asparagine (N)
+0.2
-0.1
+0.1
+0.5
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.1
+0.4
+0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
-0.1
+0.1
+0.8
N.D.
stress
R2A with Zinc 0.1 mM
+0.2
+0.4
+0.3
-0.1
N.D.
carbon source
adipate (C)
+0.1
+0.3
+0.0
+0.4
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.3
+0.3
+0.3
N.D.
carbon source
Disodium Glutarate (C)
+0.1
+0.3
+0.0
+0.5
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.1
+0.2
+0.6
N.D.
nitrogen source
L-Valine (N)
+0.3
+0.1
+0.2
+0.4
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.0
+0.2
+0.8
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.0
+0.3
+0.7
N.D.
carbon source
L-Histidine (C)
+0.5
+0.3
+0.4
+0.5
N.D.
carbon source
L-Histidine (C)
+0.4
+0.6
+0.4
+0.7
N.D.
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