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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03715 and RR42_RS03720 are separated by 137 nucleotides
RR42_RS03720 and RR42_RS03725 are separated by 117 nucleotides
RR42_RS03725 and RR42_RS03730 are separated by 82 nucleotides
RR42_RS03730 and RR42_RS03735 are separated by 202 nucleotides
RR42_RS03715: RR42_RS03715 - inositol monophosphatase, at 819,289 to 820,080
_RS03715
RR42_RS03720: RR42_RS03720 - heat-shock protein, at 820,218 to 821,471
_RS03720
RR42_RS03725: RR42_RS03725 - magnesium transporter CorA, at 821,589 to 822,608
_RS03725
RR42_RS03730: RR42_RS03730 - polyphosphate kinase, at 822,691 to 823,608
_RS03730
RR42_RS03735: RR42_RS03735 - hemagglutinin, at 823,811 to 825,478
_RS03735
Group
Condition
RR42
_RS03715
RR42
_RS03720
RR42
_RS03725
RR42
_RS03730
RR42
_RS03735
carbon source
Protocatechuic Acid (C)
-1.5
+0.1
-0.3
-0.5
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-1.5
-0.1
+0.1
-0.3
stress
R2A with nitrate 150 mM
-1.0
-0.5
-0.0
-0.2
-0.0
stress
R2A with Chloride 300 mM
-0.7
-0.3
-0.4
-0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.2
-0.9
+0.1
-0.1
stress
R2A with Zinc 0.1 mM
-1.5
+0.3
+0.3
-0.5
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.1
-0.5
-0.3
+0.1
stress
R2A with nitrate 200 mM
-0.6
+0.2
-0.7
-0.2
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.1
-0.7
-0.2
-0.1
carbon source
L-Threonine (C)
+0.2
-0.5
-0.4
-0.2
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.3
+0.0
+0.2
-0.1
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
-0.4
+0.2
-0.4
-0.4
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.9
+0.0
-0.1
+0.2
-0.1
lb
LB
-0.0
+0.2
-0.6
-0.6
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-1.2
+0.0
+0.4
-0.0
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.6
-0.4
-0.3
+0.1
+0.1
nitrogen source
L-Glutamine (N)
-0.6
+0.0
+0.3
+0.4
-0.0
carbon source
D-Fructose (C)
+0.6
+0.1
+0.4
-0.3
-0.1
carbon source
Suberic (C)
+0.7
+0.5
-0.2
-0.3
+0.2
carbon source
Valeric (C)
+0.6
-0.4
+0.7
+0.3
-0.1
carbon source
Heptanoic (C)
+0.6
+0.3
+0.4
-0.2
+0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.2
+0.7
-0.2
+0.5
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.5
+0.4
+0.4
-0.2
carbon source
adipate (C)
+0.6
-0.1
+0.1
+0.5
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.8
+0.3
+0.2
-0.1
+0.0
carbon source
Valeric (C)
+0.3
-0.0
+0.6
+0.5
-0.1
carbon source
Disodium Glutarate (C)
+0.3
+0.2
+0.6
+0.1
+0.3
carbon source
succinate (C)
+0.9
+0.2
+0.3
+0.0
+0.1
carbon source
Azelaic (C)
+0.7
+0.5
+0.6
+0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+1.0
+0.8
-0.4
+0.1
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