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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03650 and RR42_RS03655 are separated by 215 nucleotides
RR42_RS03655 and RR42_RS03660 are separated by 66 nucleotides
RR42_RS03660 and RR42_RS03665 are separated by 80 nucleotides
RR42_RS03665 and RR42_RS03670 are separated by 74 nucleotides
RR42_RS03650: RR42_RS03650 - hypothetical protein, at 811,047 to 811,331
_RS03650
RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921
_RS03655
RR42_RS03660: RR42_RS03660 - translation initiation factor 1, at 811,988 to 812,242
_RS03660
RR42_RS03665: RR42_RS03665 - translation initiation factor IF-1, at 812,323 to 812,544
_RS03665
RR42_RS03670: RR42_RS03670 - isochorismatase, at 812,619 to 812,813
_RS03670
Group
Condition
RR42
_RS03650
RR42
_RS03655
RR42
_RS03660
RR42
_RS03665
RR42
_RS03670
stress
R2A with Vancomycin 0.5 mg/ml
-0.6
-0.1
-0.2
-0.7
-2.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.2
+0.1
-0.4
-2.9
nitrogen source
L-Phenylalanine (N)
-0.5
+0.1
-0.1
-1.0
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.1
-0.1
+0.3
-1.5
carbon source
L-Malic (C)
-0.3
+0.3
-0.0
-0.1
-1.4
carbon source
Hexanoic (C)
-0.3
+0.3
-0.1
-0.2
-1.1
carbon source
Protocatechuic Acid (C)
-0.2
+0.3
+0.4
+0.1
-1.9
carbon source
butyrate (C)
-0.3
+0.3
+0.3
-0.5
-0.9
carbon source
Disodium Glutarate (C)
-0.2
+0.3
+0.2
-0.3
-1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.9
+0.2
+0.6
-1.1
+0.2
carbon source
L-Phenylalanine (C)
-0.8
+0.3
+0.1
-0.6
+0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
+0.0
+0.3
+0.4
-1.4
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
+0.2
-0.4
+0.5
-1.3
carbon source
adipate (C)
-0.3
-0.1
+0.2
-0.8
+0.6
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.3
+0.2
-0.5
+0.5
-0.7
stress
R2A with Cobalt chloride 0.3 mM
+0.4
+0.3
-0.1
-0.9
+0.2
stress
R2A with nitrate 200 mM
+0.2
+0.2
+0.1
+0.6
-1.0
stress
R2A with Cobalt chloride 0.5 mM
-0.9
+0.3
+0.3
-1.0
+1.7
stress
R2A with Chlorite 4 mM
-0.3
+0.3
+0.1
-0.4
+0.9
carbon source
Pimelic (C)
-0.2
+0.4
+0.4
-0.6
+0.5
stress
R2A with A22 0.01 mg/ml
-0.2
+0.3
+0.0
+1.0
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.4
+0.5
+0.3
+0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.0
+0.5
-0.8
+1.3
stress
R2A with copper (II) chloride 0.25 mM
-0.4
+0.4
+0.0
+0.3
+0.8
carbon source
Trisodium citrate (C)
-0.4
+0.2
+0.3
+0.5
+0.6
carbon source
a-Ketoglutaric (C)
-0.1
-0.3
+0.4
+0.1
+1.2
carbon source
L-Threonine (C)
-0.3
+0.3
+0.3
+0.8
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.9
+0.1
+0.6
+0.4
+1.4
carbon source
Hexanoic (C)
-0.3
+0.7
+0.4
+0.3
+1.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.3
+0.6
+0.5
+1.8
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