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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03500 and RR42_RS03505 are separated by 88 nucleotides
RR42_RS03505 and RR42_RS03510 are separated by 477 nucleotides
RR42_RS03510 and RR42_RS03515 are separated by 63 nucleotides
RR42_RS03515 and RR42_RS03520 are separated by 49 nucleotides
RR42_RS03500: RR42_RS03500 - hypothetical protein, at 777,512 to 778,042
_RS03500
RR42_RS03505: RR42_RS03505 - replication/virulence associated protein, at 778,131 to 778,712
_RS03505
RR42_RS03510: RR42_RS03510 - ATPase AAA, at 779,190 to 781,910
_RS03510
RR42_RS03515: RR42_RS03515 - hypothetical protein, at 781,974 to 782,507
_RS03515
RR42_RS03520: RR42_RS03520 - type VI secretion protein EvpB, at 782,557 to 784,050
_RS03520
Group
Condition
RR42
_RS03500
RR42
_RS03505
RR42
_RS03510
RR42
_RS03515
RR42
_RS03520
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.9
-0.3
-1.0
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.2
-0.2
-1.9
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.0
-0.3
-0.4
-0.3
-0.4
stress
R2A with A22 0.01 mg/ml
-0.2
-0.5
-0.4
-0.3
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.0
-0.9
-0.2
-0.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.2
-0.5
-0.5
-0.1
stress
R2A with nitrate 200 mM
+0.0
-0.7
+0.3
-0.3
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.0
+0.2
-1.0
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.4
-0.2
-0.1
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.3
-0.4
-0.6
+0.1
+0.1
carbon source
Suberic (C)
+0.3
+0.2
+0.1
-0.9
-0.1
stress
R2A with Chloride 300 mM
-0.0
+0.3
-0.4
-0.4
+0.1
carbon source
L-Asparagine (C)
-0.1
+0.3
-0.2
-0.5
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
+0.2
-0.2
+0.2
-0.0
carbon source
Protocatechuic Acid (C)
+0.4
+0.0
+0.1
-0.9
+0.0
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.3
+0.1
-0.3
-0.3
-0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.1
+0.3
+0.6
-0.5
lb
LB
-0.3
+0.4
-0.0
-0.3
+0.1
carbon source
Azelaic (C)
-0.1
+0.5
+0.1
-0.4
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.1
+0.1
+0.6
-0.3
stress
R2A with Cephalothin 0.25 mg/ml
-0.1
+0.3
-0.3
+0.5
-0.1
nitrogen source
L-Phenylalanine (N)
+0.1
+0.6
+0.1
-0.4
+0.0
carbon source
adipate (C)
+0.3
+0.2
+0.4
-0.2
-0.3
carbon source
Hexanoic (C)
+0.5
-0.3
+0.3
+0.2
-0.2
carbon source
L-Leucine (C)
-0.0
+0.7
-0.2
+0.2
-0.1
nitrogen source
L-Threonine (N)
-0.1
+0.5
+0.0
+0.4
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.6
-0.0
+0.2
-0.1
carbon source
L-Glutamine (C)
-0.1
+0.6
+0.0
+0.3
+0.2
temperature
R2A 23C
+0.3
+0.3
+0.2
+0.3
+0.3
nitrogen source
L-Glutamine (N)
+0.1
+0.5
+0.4
+0.6
+0.0
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