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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03460 and RR42_RS03465 are separated by 207 nucleotides
RR42_RS03465 and RR42_RS03470 are separated by 6 nucleotides
RR42_RS03470 and RR42_RS03475 are separated by 1064 nucleotides
RR42_RS03475 and RR42_RS03480 are separated by 153 nucleotides
RR42_RS03460: RR42_RS03460 - tetraacyldisaccharide 4'-kinase, at 767,784 to 768,893
_RS03460
RR42_RS03465: RR42_RS03465 - biopolymer transporter ExbD, at 769,101 to 769,529
_RS03465
RR42_RS03470: RR42_RS03470 - flagellar motor protein MotA, at 769,536 to 770,156
_RS03470
RR42_RS03475: RR42_RS03475 - exodeoxyribonuclease VII large subunit, at 771,221 to 772,606
_RS03475
RR42_RS03480: RR42_RS03480 - superoxide dismutase, at 772,760 to 773,341
_RS03480
Group
Condition
RR42
_RS03460
RR42
_RS03465
RR42
_RS03470
RR42
_RS03475
RR42
_RS03480
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-1.4
+0.1
-1.0
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
+0.1
+0.2
-2.5
N.D.
carbon source
Suberic (C)
N.D.
-1.0
-0.3
-0.1
N.D.
carbon source
Dodecandioic (C)
N.D.
-0.7
-0.4
-0.4
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
-0.5
-0.4
-0.4
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-1.0
-0.3
-0.0
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-1.2
+0.1
-0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.7
-0.2
-0.3
N.D.
carbon source
Valeric (C)
N.D.
-0.7
-0.2
-0.2
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
-1.2
+0.3
-0.1
N.D.
carbon source
Octanoic (C)
N.D.
-0.1
-0.3
-0.6
N.D.
carbon source
adipate (C)
N.D.
-0.9
-0.2
+0.1
N.D.
carbon source
L-Malic (C)
N.D.
-0.7
+0.1
-0.3
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.9
-0.1
+0.2
N.D.
carbon source
L-Histidine (C)
N.D.
-0.4
+0.1
-0.5
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.5
+0.0
-0.3
N.D.
stress
R2A with nitrate 200 mM
N.D.
-0.6
+0.2
-0.2
N.D.
carbon source
D-Lactate (C)
N.D.
-0.4
+0.2
-0.3
N.D.
nitrogen source
L-Lysine (N)
N.D.
-0.5
+0.2
-0.2
N.D.
temperature
R2A 37C
N.D.
+0.3
-0.3
-0.5
N.D.
carbon source
L-Asparagine (C)
N.D.
-0.7
+0.3
-0.1
N.D.
carbon source
D,L-Lactate (C)
N.D.
+0.5
-0.5
-0.3
N.D.
carbon source
Trisodium citrate (C)
N.D.
-0.4
+0.3
-0.2
N.D.
carbon source
Hexanoic (C)
N.D.
+0.3
-0.3
-0.2
N.D.
nitrogen source
nitrite (N)
N.D.
+0.3
+0.1
-0.4
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.1
+0.5
-0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
+0.5
+0.2
-0.3
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.7
+0.2
-0.2
N.D.
carbon source
D,L-Lactate (C)
N.D.
+0.5
+0.2
+0.2
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
+0.4
+0.4
+0.3
N.D.
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