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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03325 and RR42_RS03330 are separated by 211 nucleotides
RR42_RS03330 and RR42_RS03335 are separated by 64 nucleotides
RR42_RS03335 and RR42_RS03340 are separated by 80 nucleotides
RR42_RS03340 and RR42_RS03345 are separated by 35 nucleotides
RR42_RS03325: RR42_RS03325 - membrane protein, at 740,470 to 741,747
_RS03325
RR42_RS03330: RR42_RS03330 - GYD family protein, at 741,959 to 742,252
_RS03330
RR42_RS03335: RR42_RS03335 - glycerol-3-phosphate acyltransferase, at 742,317 to 742,934
_RS03335
RR42_RS03340: RR42_RS03340 - membrane protein, at 743,015 to 743,506
_RS03340
RR42_RS03345: RR42_RS03345 - recombinase XerD, at 743,542 to 744,462
_RS03345
Group
Condition
RR42
_RS03325
RR42
_RS03330
RR42
_RS03335
RR42
_RS03340
RR42
_RS03345
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
-1.3
N.D.
-0.5
-0.7
r2a
R2A
-1.0
-0.7
N.D.
-0.5
-0.7
nitrogen source
casaminos (N)
-0.7
-0.7
N.D.
-0.4
-0.7
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
-0.4
N.D.
-0.4
-1.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.8
-0.7
N.D.
-0.2
-0.5
temperature
R2A 23C
-0.6
-0.5
N.D.
-0.5
-0.5
temperature
R2A 23C
-0.3
-0.5
N.D.
-0.4
-0.9
stress
R2A with nitrate 200 mM
-0.3
-0.3
N.D.
-0.7
-0.7
nitrogen source
Glucuronamide (N)
-0.3
-0.8
N.D.
-0.2
-0.5
stress
R2A with Cobalt chloride 0.5 mM
-0.6
+0.0
N.D.
-0.1
-1.1
nitrogen source
L-Lysine (N)
-0.1
-0.4
N.D.
-0.4
-0.8
nitrogen source
L-Serine (N)
-0.2
-0.6
N.D.
-0.1
-0.8
stress
R2A with Chlorite 4 mM
-0.8
-0.1
N.D.
-0.2
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.8
N.D.
+0.0
-0.6
carbon source
L-Histidine (C)
+0.0
-0.5
N.D.
+0.1
-1.1
carbon source
D,L-Lactate (C)
+0.0
-0.1
N.D.
-0.2
-1.2
carbon source
Ethanol (C)
-0.2
+0.0
N.D.
+0.2
-1.5
carbon source
L-Histidine (C)
+0.1
-0.1
N.D.
-0.0
-1.4
carbon source
a-Ketoglutaric (C)
+0.2
-0.5
N.D.
-0.4
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.6
N.D.
+0.6
+0.2
temperature
R2A 37C
+0.7
-0.5
N.D.
-0.0
-0.3
stress
R2A with Chlorite 4 mM
-0.4
+0.4
N.D.
+0.4
+0.4
stress
R2A with Bacitracin 0.5 mg/ml
+0.4
+0.4
N.D.
+0.6
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.3
N.D.
+0.6
+0.6
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.6
N.D.
+0.5
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
+1.0
N.D.
+0.3
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.3
+0.7
N.D.
+0.4
+0.5
stress
R2A with nitrate 150 mM
+0.7
+0.5
N.D.
+0.7
+0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.3
+0.9
N.D.
+0.6
+0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.7
+1.0
N.D.
+0.7
+0.2
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