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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS03230 and RR42_RS03235 are separated by 105 nucleotides
RR42_RS03235 and RR42_RS03240 are separated by 267 nucleotides
RR42_RS03240 and RR42_RS03245 are separated by 384 nucleotides
RR42_RS03245 and RR42_RS03250 are separated by 138 nucleotides
RR42_RS03230: RR42_RS03230 - phosphoribosylaminoimidazole carboxylase, at 715,024 to 716,268
_RS03230
RR42_RS03235: RR42_RS03235 - translation factor Sua5, at 716,374 to 717,360
_RS03235
RR42_RS03240: RR42_RS03240 - integrase, at 717,628 to 718,800
_RS03240
RR42_RS03245: RR42_RS03245 - D-alanyl-D-alanine carboxypeptidase, at 719,185 to 720,717
_RS03245
RR42_RS03250: RR42_RS03250 - MarR family transcriptional regulator, at 720,856 to 721,416
_RS03250
Group
Condition
RR42
_RS03230
RR42
_RS03235
RR42
_RS03240
RR42
_RS03245
RR42
_RS03250
carbon source
Octanoic (C)
N.D.
N.D.
N.D.
-1.3
-0.4
carbon source
Dodecandioic (C)
N.D.
N.D.
N.D.
-1.0
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
-0.5
-0.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
N.D.
N.D.
-0.1
-1.0
r2a
R2A
N.D.
N.D.
N.D.
-0.2
-0.8
carbon source
Octanoic (C)
N.D.
N.D.
N.D.
-1.0
+0.0
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
N.D.
-0.3
-0.6
carbon source
Disodium Glutarate (C)
N.D.
N.D.
N.D.
-0.5
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
N.D.
N.D.
-0.0
-0.9
carbon source
Dodecandioic (C)
N.D.
N.D.
N.D.
-1.0
+0.2
nitrogen source
L-Lysine (N)
N.D.
N.D.
N.D.
-0.2
-0.6
carbon source
Suberic (C)
N.D.
N.D.
N.D.
+0.1
-0.9
stress
R2A with Chloride 300 mM
N.D.
N.D.
N.D.
-0.3
-0.5
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
N.D.
N.D.
-0.2
-0.6
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
N.D.
N.D.
-0.0
-0.7
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
N.D.
N.D.
-0.1
-0.7
nitrogen source
nitrite (N)
N.D.
N.D.
N.D.
-0.2
-0.6
carbon source
succinate (C)
N.D.
N.D.
N.D.
+0.1
-0.7
carbon source
Hexanoic (C)
N.D.
N.D.
N.D.
+0.3
-0.9
lb
LB
N.D.
N.D.
N.D.
+0.4
-1.0
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
N.D.
+0.7
-1.1
stress
R2A with nitrate 200 mM
N.D.
N.D.
N.D.
-0.7
+0.3
carbon source
Valeric (C)
N.D.
N.D.
N.D.
+0.3
-0.5
stress
R2A with Chloride 300 mM
N.D.
N.D.
N.D.
-0.4
+0.5
carbon source
adipate (C)
N.D.
N.D.
N.D.
+0.7
-0.2
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
-0.0
+0.9
carbon source
L-Malic (C)
N.D.
N.D.
N.D.
+0.2
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
N.D.
N.D.
+0.4
+0.7
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
N.D.
N.D.
+1.2
-0.1
carbon source
Valeric (C)
N.D.
N.D.
N.D.
+1.0
+0.2
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