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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02895 and RR42_RS02900 are separated by 117 nucleotides
RR42_RS02900 and RR42_RS02905 are separated by 220 nucleotides
RR42_RS02905 and RR42_RS02910 are separated by 34 nucleotides
RR42_RS02910 and RR42_RS02915 are separated by 220 nucleotides
RR42_RS02895: RR42_RS02895 - hypothetical protein, at 646,421 to 646,651
_RS02895
RR42_RS02900: RR42_RS02900 - LysR family transcriptional regulator, at 646,769 to 647,710
_RS02900
RR42_RS02905: RR42_RS02905 - MFS transporter, at 647,931 to 648,929
_RS02905
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
RR42_RS02915: RR42_RS02915 - hypothetical protein, at 650,435 to 651,466
_RS02915
Group
Condition
RR42
_RS02895
RR42
_RS02900
RR42
_RS02905
RR42
_RS02910
RR42
_RS02915
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.4
-0.8
-0.1
-0.3
nitrogen source
casaminos (N)
-0.4
-0.4
-0.4
-0.5
-0.3
nitrogen source
Glucuronamide (N)
-0.7
-0.2
-0.1
-0.5
-0.4
temperature
R2A 23C
-0.6
-0.5
-0.2
-0.4
-0.4
nitrogen source
L-Isoleucine (N)
-0.2
-0.2
-0.6
-0.3
-0.5
temperature
R2A 23C
-0.4
-0.4
-0.2
-0.4
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.8
-0.2
-0.1
-0.3
-0.1
stress
R2A with nitrate 200 mM
-0.5
-0.1
-0.7
-0.3
+0.1
r2a
R2A
-0.4
-0.2
-0.2
-0.8
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
-0.7
-0.1
-0.1
-0.3
-0.3
stress
R2A with Zinc 0.1 mM
-0.3
-0.3
-0.2
-0.5
+0.1
carbon source
Protocatechuic Acid (C)
-0.0
+0.2
-0.6
-0.4
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
-0.2
-0.4
+0.4
-0.3
r2a
R2A
-0.3
+0.2
+0.5
-0.1
-0.5
lb
LB
-0.5
+0.4
-0.4
-0.1
+0.6
carbon source
Azelaic (C)
-0.3
+0.4
+0.5
-0.3
+0.0
carbon source
adipate (C)
+0.0
+1.1
-0.3
+0.1
-0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.5
+0.3
-0.3
+0.2
+0.5
stress
R2A with nitrate 150 mM
+0.4
+0.3
+0.5
-0.0
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
+0.5
-0.2
+0.3
+0.2
carbon source
adipate (C)
+0.1
+1.2
+0.0
-0.0
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.1
+0.3
+0.1
+0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.5
+0.1
+0.1
+0.4
+0.4
stress
R2A with Bacitracin 0.5 mg/ml
+0.4
+0.5
+0.3
+0.2
+0.2
r2a
R2A
+0.4
+0.2
+0.7
-0.0
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.6
+0.2
+0.1
+0.4
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.5
+0.2
+0.6
+0.1
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
+0.5
+0.3
+0.2
+0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.4
+0.4
+0.7
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+0.6
+0.6
+0.4
+0.5
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