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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02890 and RR42_RS02895 are separated by 327 nucleotides
RR42_RS02895 and RR42_RS02900 are separated by 117 nucleotides
RR42_RS02900 and RR42_RS02905 are separated by 220 nucleotides
RR42_RS02905 and RR42_RS02910 are separated by 34 nucleotides
RR42_RS02890: RR42_RS02890 - 4-carboxymuconolactone decarboxylase, at 645,674 to 646,093
_RS02890
RR42_RS02895: RR42_RS02895 - hypothetical protein, at 646,421 to 646,651
_RS02895
RR42_RS02900: RR42_RS02900 - LysR family transcriptional regulator, at 646,769 to 647,710
_RS02900
RR42_RS02905: RR42_RS02905 - MFS transporter, at 647,931 to 648,929
_RS02905
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
Group
Condition
RR42
_RS02890
RR42
_RS02895
RR42
_RS02900
RR42
_RS02905
RR42
_RS02910
nitrogen source
casaminos (N)
-0.8
-0.4
-0.4
-0.4
-0.5
temperature
R2A 23C
-0.8
-0.4
-0.4
-0.2
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.4
-0.4
-0.8
-0.1
nitrogen source
Glucuronamide (N)
-0.5
-0.7
-0.2
-0.1
-0.5
r2a
R2A
-0.4
-0.4
-0.2
-0.2
-0.8
temperature
R2A 23C
-0.1
-0.6
-0.5
-0.2
-0.4
nitrogen source
L-Isoleucine (N)
-0.3
-0.2
-0.2
-0.6
-0.3
stress
R2A with nitrate 200 mM
-0.1
-0.5
-0.1
-0.7
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.8
-0.2
-0.1
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.4
-0.3
-0.3
-0.2
-0.3
stress
R2A with Zinc 0.1 mM
-0.2
-0.3
-0.3
-0.2
-0.5
nitrogen source
L-Glutamine (N)
-0.8
+0.2
-0.1
-0.3
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.5
-0.1
-0.2
-0.4
+0.4
lb
LB
-0.2
-0.5
+0.4
-0.4
-0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.0
+0.2
-0.6
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
-0.4
+0.4
-0.3
+0.2
r2a
R2A
-0.3
-0.3
+0.2
+0.5
-0.1
carbon source
Azelaic (C)
+0.2
-0.3
+0.4
+0.5
-0.3
carbon source
adipate (C)
-0.1
+0.0
+1.1
-0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
+0.2
-0.3
+0.5
+0.0
carbon source
adipate (C)
-0.4
+0.1
+1.2
+0.0
-0.0
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.4
+0.5
+0.3
-0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.5
+0.5
-0.2
+0.3
stress
R2A with nitrate 200 mM
+0.7
+0.2
+0.2
+0.4
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
+0.3
+0.4
+0.5
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
+0.4
+0.4
+0.7
+0.3
r2a
R2A
+0.5
+0.4
+0.2
+0.7
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.6
+0.5
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.7
+0.5
+0.2
+0.6
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
+0.6
+0.6
+0.6
+0.4
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