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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02800 and RR42_RS02805 are separated by 116 nucleotides
RR42_RS02805 and RR42_RS02810 overlap by 4 nucleotides
RR42_RS02810 and RR42_RS02815 are separated by 17 nucleotides
RR42_RS02815 and RR42_RS02820 are separated by 29 nucleotides
RR42_RS02800: RR42_RS02800 - glyoxalase I, at 624,172 to 624,579
_RS02800
RR42_RS02805: RR42_RS02805 - metal-dependent hydrolase, at 624,696 to 625,580
_RS02805
RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329
_RS02810
RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925
_RS02815
RR42_RS02820: RR42_RS02820 - glycyl-tRNA synthetase subunit beta, at 626,955 to 629,087
_RS02820
Group
Condition
RR42
_RS02800
RR42
_RS02805
RR42
_RS02810
RR42
_RS02815
RR42
_RS02820
stress
R2A with Nickel (II) chloride 0.25 mM
-0.0
+0.1
-6.1
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.4
+0.3
-5.5
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-0.4
-4.1
N.D.
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.0
+0.2
-4.8
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.4
-3.7
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.2
+0.1
-4.1
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.1
-3.8
N.D.
N.D.
carbon source
Pimelic (C)
-0.1
+0.5
-3.9
N.D.
N.D.
stress
R2A with Chloride 300 mM
+0.1
-0.2
-3.3
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.0
+0.2
-3.5
N.D.
N.D.
carbon source
propionate (C)
-0.2
-0.0
-3.1
N.D.
N.D.
stress
R2A with nitrate 150 mM
+0.0
+0.4
-3.7
N.D.
N.D.
nitrogen source
D-Alanine (N)
-0.3
-0.0
-2.7
N.D.
N.D.
lb
LB
-0.3
-1.5
-1.2
N.D.
N.D.
stress
R2A with A22 0.01 mg/ml
-0.2
-0.3
-2.3
N.D.
N.D.
carbon source
adipate (C)
+0.1
+0.2
-2.9
N.D.
N.D.
stress
R2A with nitrate 200 mM
+0.2
-0.4
-2.4
N.D.
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.2
-2.9
N.D.
N.D.
carbon source
Pimelic (C)
+0.0
+0.4
-2.8
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.1
+0.3
-2.3
N.D.
N.D.
temperature
R2A 37C
+0.2
+0.3
-2.4
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
+0.6
+2.0
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.2
+2.8
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.6
+2.7
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.4
+3.8
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.2
+3.6
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
+0.0
+3.6
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.0
+3.6
N.D.
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
+0.2
+3.9
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.7
+0.3
+9.4
N.D.
N.D.
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