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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02705 and RR42_RS02710 are separated by 159 nucleotides
RR42_RS02710 and RR42_RS02715 are separated by 132 nucleotides
RR42_RS02715 and RR42_RS02720 are separated by 526 nucleotides
RR42_RS02720 and RR42_RS02725 are separated by 17 nucleotides
RR42_RS02705: RR42_RS02705 - Holliday junction DNA helicase RuvA, at 602,994 to 603,575
_RS02705
RR42_RS02710: RR42_RS02710 - glycerophosphodiester phosphodiesterase, at 603,735 to 604,868
_RS02710
RR42_RS02715: RR42_RS02715 - Holliday junction DNA helicase, at 605,001 to 605,546
_RS02715
RR42_RS02720: RR42_RS02720 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 606,073 to 607,647
_RS02720
RR42_RS02725: RR42_RS02725 - Fis family transcriptional regulator, at 607,665 to 607,898
_RS02725
Group
Condition
RR42
_RS02705
RR42
_RS02710
RR42
_RS02715
RR42
_RS02720
RR42
_RS02725
lb
LB
-6.8
-0.3
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-5.6
+0.2
N.D.
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-5.1
+0.2
N.D.
N.D.
N.D.
nitrogen source
Glycine (N)
-4.2
-0.0
N.D.
N.D.
N.D.
nitrogen source
nitrite (N)
-4.2
+0.0
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-4.5
+0.3
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-4.1
+0.2
N.D.
N.D.
N.D.
nitrogen source
D-Alanine (N)
-4.0
+0.1
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
-3.6
+0.0
N.D.
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-3.6
-0.0
N.D.
N.D.
N.D.
carbon source
propionate (C)
-3.6
+0.1
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-3.5
+0.0
N.D.
N.D.
N.D.
nitrogen source
L-Threonine (N)
-3.2
-0.2
N.D.
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-3.4
+0.1
N.D.
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-3.6
+0.3
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
-3.3
+0.1
N.D.
N.D.
N.D.
nitrogen source
L-Valine (N)
-3.4
+0.2
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-2.7
-0.4
N.D.
N.D.
N.D.
nitrogen source
Glucuronamide (N)
-3.0
-0.0
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-2.7
-0.3
N.D.
N.D.
N.D.
nitrogen source
D-Alanine (N)
-3.0
-0.0
N.D.
N.D.
N.D.
nitrogen source
L-Tryptophan (N)
-3.2
+0.2
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-2.7
-0.2
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
-2.9
+0.1
N.D.
N.D.
N.D.
nitrogen source
L-Glutamine (N)
-2.8
+0.1
N.D.
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-3.0
+0.3
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-2.9
+0.2
N.D.
N.D.
N.D.
nitrogen source
L-Lysine (N)
-2.8
+0.1
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-2.8
+0.1
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
-2.8
+0.3
N.D.
N.D.
N.D.
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