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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02620 and RR42_RS02625 are separated by 765 nucleotides
RR42_RS02625 and RR42_RS02630 are separated by 11 nucleotides
RR42_RS02630 and RR42_RS02635 are separated by 270 nucleotides
RR42_RS02635 and RR42_RS02640 are separated by 34 nucleotides
RR42_RS02620: RR42_RS02620 - peroxiredoxin, at 588,234 to 588,656
_RS02620
RR42_RS02625: RR42_RS02625 - 50S ribosomal protein L13, at 589,422 to 589,850
_RS02625
RR42_RS02630: RR42_RS02630 - 30S ribosomal protein S9, at 589,862 to 590,254
_RS02630
RR42_RS02635: RR42_RS02635 - DNA-binding protein, at 590,525 to 591,274
_RS02635
RR42_RS02640: RR42_RS02640 - membrane protein, at 591,309 to 591,722
_RS02640
Group
Condition
RR42
_RS02620
RR42
_RS02625
RR42
_RS02630
RR42
_RS02635
RR42
_RS02640
carbon source
D-Fructose (C)
-0.4
N.D.
N.D.
-0.3
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
-0.0
N.D.
N.D.
-0.3
-0.6
lb
LB
-0.8
N.D.
N.D.
-0.4
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
N.D.
N.D.
+0.3
-0.7
r2a
R2A
+0.1
N.D.
N.D.
-0.1
-0.6
carbon source
L-Asparagine (C)
+0.0
N.D.
N.D.
+0.1
-0.7
nitrogen source
nitrite (N)
-0.4
N.D.
N.D.
+0.2
-0.2
carbon source
L-Glutamine (C)
-0.2
N.D.
N.D.
+0.2
-0.4
carbon source
a-Ketoglutaric (C)
-0.4
N.D.
N.D.
-0.2
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.5
N.D.
N.D.
-0.1
-0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
N.D.
N.D.
-0.2
+0.4
carbon source
Trisodium citrate (C)
+0.0
N.D.
N.D.
-0.4
+0.4
carbon source
Heptanoic (C)
+0.2
N.D.
N.D.
+0.3
-0.4
carbon source
succinate (C)
-0.4
N.D.
N.D.
+0.1
+0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
N.D.
N.D.
+0.2
+0.4
carbon source
L-Threonine (C)
-0.3
N.D.
N.D.
-0.2
+0.7
carbon source
L-Glutamine (C)
-0.3
N.D.
N.D.
-0.1
+0.6
carbon source
Protocatechuic Acid (C)
-0.4
N.D.
N.D.
+0.3
+0.3
carbon source
Disodium Glutarate (C)
-0.3
N.D.
N.D.
-0.0
+0.8
stress
R2A with Lomefloxacin 0.001 mM
+0.6
N.D.
N.D.
-0.3
+0.2
carbon source
L-Lactate (C)
-0.1
N.D.
N.D.
-0.1
+0.7
carbon source
Dodecandioic (C)
-0.2
N.D.
N.D.
+0.0
+0.7
carbon source
Azelaic (C)
-0.2
N.D.
N.D.
+0.4
+0.3
carbon source
pyruvate (C)
-0.1
N.D.
N.D.
+0.1
+0.7
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
N.D.
N.D.
-0.1
+0.6
stress
R2A with Chloride 300 mM
+0.0
N.D.
N.D.
-0.1
+0.7
stress
R2A with Cobalt chloride 0.5 mM
+0.7
N.D.
N.D.
+0.2
-0.2
stress
R2A with Sisomicin 0.035 mg/ml
-0.0
N.D.
N.D.
+0.2
+0.6
carbon source
D,L-Lactate (C)
+0.0
N.D.
N.D.
+0.3
+0.6
stress
R2A with Zinc 0.1 mM
-0.1
N.D.
N.D.
-0.0
+1.2
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