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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02585 and RR42_RS02590 overlap by 4 nucleotides
RR42_RS02590 and RR42_RS02595 are separated by 145 nucleotides
RR42_RS02595 and RR42_RS02600 are separated by 130 nucleotides
RR42_RS02600 and RR42_RS02605 are separated by 17 nucleotides
RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540
_RS02585
RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271
_RS02590
RR42_RS02595: RR42_RS02595 - glutamine amidotransferase, at 582,417 to 583,247
_RS02595
RR42_RS02600: RR42_RS02600 - tartrate dehydrogenase, at 583,378 to 584,466
_RS02600
RR42_RS02605: RR42_RS02605 - hydroxypyruvate reductase, at 584,484 to 585,803
_RS02605
Group
Condition
RR42
_RS02585
RR42
_RS02590
RR42
_RS02595
RR42
_RS02600
RR42
_RS02605
carbon source
L-Glutamine (C)
-1.6
-1.4
-0.0
-0.2
+0.1
carbon source
L-Glutamine (C)
-1.0
-2.0
+0.2
-0.1
-0.0
nitrogen source
nitrite (N)
-0.0
-0.1
-1.9
-0.4
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.0
-0.8
-0.5
-0.1
+0.1
carbon source
D,L-Lactate (C)
+0.1
-1.2
-0.1
+0.1
-0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.6
-0.4
+0.1
+0.2
carbon source
L-Threonine (C)
-0.1
-0.9
+0.2
-0.0
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.6
-0.1
+0.3
-0.2
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+0.3
-0.5
-0.2
+0.2
carbon source
Hexanoic (C)
+0.3
-0.4
-0.2
+0.1
-0.3
lb
LB
-1.0
-0.6
+1.2
+0.0
+0.1
temperature
R2A 23C
+0.4
-0.5
+0.2
-0.0
-0.2
nitrogen source
L-Glutamine (N)
-0.5
+0.4
+0.1
+0.3
-0.2
carbon source
Protocatechuic Acid (C)
+0.7
+0.1
-0.6
+0.2
-0.0
r2a
R2A
-0.1
+0.5
+0.2
+0.1
-0.2
nitrogen source
nitrate (N)
+0.1
+0.7
+0.2
+0.1
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.7
-0.2
+0.2
+0.3
nitrogen source
L-Citrulline (N)
+0.2
+0.6
+0.2
-0.1
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.5
-0.1
+0.4
+0.2
-0.0
carbon source
adipate (C)
+0.6
+0.0
+0.3
+0.2
+0.1
nitrogen source
L-Isoleucine (N)
+0.2
+0.7
+0.2
+0.1
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.4
+0.5
+0.1
+0.2
+0.4
carbon source
Carbon source Phenylacetic 2.5 mM
+0.5
+0.8
+0.2
+0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.6
+1.4
+0.1
-0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.5
+1.7
-0.2
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.4
+2.5
+0.0
+0.2
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+2.9
+2.2
-0.2
-0.1
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+3.1
+2.4
-0.4
-0.0
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+3.9
+3.8
-0.3
+0.2
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+4.4
+3.9
-0.2
-0.1
+0.2
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