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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02555 and RR42_RS02560 are separated by 60 nucleotides
RR42_RS02560 and RR42_RS02565 are separated by 174 nucleotides
RR42_RS02565 and RR42_RS02570 are separated by 177 nucleotides
RR42_RS02570 and RR42_RS02575 are separated by 364 nucleotides
RR42_RS02555: RR42_RS02555 - transcriptional regulator, at 575,043 to 575,501
_RS02555
RR42_RS02560: RR42_RS02560 - cysteine dioxygenase, at 575,562 to 576,158
_RS02560
RR42_RS02565: RR42_RS02565 - LysR family transcriptional regulator, at 576,333 to 577,304
_RS02565
RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789
_RS02570
RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053
_RS02575
Group
Condition
RR42
_RS02555
RR42
_RS02560
RR42
_RS02565
RR42
_RS02570
RR42
_RS02575
carbon source
L-Proline (C)
-0.3
+0.0
-1.4
-1.4
-0.8
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
+0.1
-0.8
-0.8
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.6
+0.4
-0.4
-0.6
-0.5
nitrogen source
L-Leucine (N)
-0.2
+0.2
-0.6
-0.8
+0.1
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-0.5
-0.5
-0.1
carbon source
adipate (C)
-1.3
+0.3
+0.2
-0.1
+0.1
lb
LB
-0.6
-0.3
+0.7
-0.1
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.7
-0.2
-0.3
-0.6
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.6
+0.1
-0.2
-0.9
+0.2
carbon source
L-Glutamine (C)
+0.4
-0.0
+0.2
+0.4
-1.1
stress
R2A with Zinc 0.1 mM
+0.5
+0.3
-0.6
-0.3
+0.2
stress
R2A with Chlorite 4 mM
-0.8
-0.3
+0.8
+0.9
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.4
+0.5
+0.4
+0.1
carbon source
Protocatechuic Acid (C)
+0.5
+0.1
+0.1
-0.4
+0.7
stress
R2A with Cisplatin 0.001 mg/ml
+0.9
+0.2
-0.2
-0.1
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
+0.1
+0.6
+0.7
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.0
+0.5
-1.1
+1.8
carbon source
Carbon source Phenylacetic 2.5 mM
-0.4
+0.2
+0.6
+0.3
+0.8
carbon source
Heptanoic (C)
+0.8
+0.2
+0.4
+0.0
+0.2
carbon source
Octanoic (C)
+0.4
+0.4
+0.4
+0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
+0.6
+0.3
-0.9
+2.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.6
-0.1
+0.5
+0.6
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.2
+0.6
+0.7
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
+0.8
+0.6
-0.9
+2.0
carbon source
Protocatechuic Acid (C)
+0.9
+0.6
+0.4
-0.2
+0.4
stress
R2A with Chlorite 4 mM
+0.3
-0.1
+1.0
+1.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.7
+1.2
+1.0
-0.6
+3.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.8
+1.6
+1.1
-0.5
+2.9
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-2.9
+2.0
+1.7
-0.8
+4.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.1
+2.7
+1.7
-1.2
+4.4
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