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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02530 and RR42_RS02535 are separated by 177 nucleotides
RR42_RS02535 and RR42_RS02540 are separated by 296 nucleotides
RR42_RS02540 and RR42_RS02545 overlap by 4 nucleotides
RR42_RS02545 and RR42_RS02550 are separated by 23 nucleotides
RR42_RS02530: RR42_RS02530 - acyl-CoA hydrolase, at 569,492 to 569,914
_RS02530
RR42_RS02535: RR42_RS02535 - metal ABC transporter permease, at 570,092 to 571,987
_RS02535
RR42_RS02540: RR42_RS02540 - taurine ABC transporter permease, at 572,284 to 573,306
_RS02540
RR42_RS02545: RR42_RS02545 - nitrate ABC transporter ATP-binding protein, at 573,303 to 574,166
_RS02545
RR42_RS02550: RR42_RS02550 - ABC transporter permease, at 574,190 to 574,954
_RS02550
Group
Condition
RR42
_RS02530
RR42
_RS02535
RR42
_RS02540
RR42
_RS02545
RR42
_RS02550
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
-0.1
-1.0
-0.6
-1.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
-0.3
-0.5
-0.3
-1.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.2
-1.5
-0.5
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
-0.1
+0.2
-0.7
-1.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
-0.3
-0.0
-0.4
-0.6
stress
R2A with sodium fluoride 100 mM
-0.3
-0.1
-0.5
-0.7
-0.2
stress
R2A with Bacitracin 0.5 mg/ml
+0.2
-0.1
-0.6
-1.0
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.1
-0.8
-0.6
-0.3
lb
LB
+0.4
-0.5
+0.5
-1.4
-0.4
carbon source
Octanoic (C)
-0.1
+0.2
-1.0
-0.3
-0.0
carbon source
Dodecandioic (C)
-0.2
-0.0
-1.1
+0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.5
+0.1
-0.8
-0.1
-0.7
nitrogen source
nitrite (N)
-0.1
-1.2
+0.3
+0.2
+0.2
nitrogen source
L-Citrulline (N)
-0.2
+0.2
+0.4
-0.5
-0.3
carbon source
Trisodium citrate (C)
+0.2
-0.1
-1.1
+0.7
-0.0
carbon source
Disodium Glutarate (C)
-0.3
+0.1
+0.3
+0.8
-0.9
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.0
-0.6
+0.7
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
-0.1
-0.5
+0.6
-0.3
nitrogen source
L-Asparagine (N)
+0.3
+0.2
+0.4
-0.6
-0.1
carbon source
Hexanoic (C)
-0.9
+0.1
+0.2
+1.0
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.2
+0.3
+0.5
-0.4
nitrogen source
L-Leucine (N)
-0.5
+0.0
+0.2
+0.9
-0.2
carbon source
succinate (C)
+0.1
-0.3
+0.1
+1.0
-0.1
nitrogen source
L-Isoleucine (N)
-0.2
+0.2
+0.6
+0.6
+0.1
nitrogen source
L-Isoleucine (N)
-0.3
+0.2
+0.6
+0.8
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.2
-1.0
+1.3
+0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
+0.1
+0.8
+0.2
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.4
+0.3
+0.5
+0.4
+0.1
nitrogen source
L-Serine (N)
+0.2
+0.2
+0.6
+0.7
+0.0
nitrogen source
L-Phenylalanine (N)
+0.1
+0.3
+0.4
+1.3
-0.0
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