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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02495 and RR42_RS02500 are separated by 369 nucleotides
RR42_RS02500 and RR42_RS02505 are separated by 73 nucleotides
RR42_RS02505 and RR42_RS02510 are separated by 195 nucleotides
RR42_RS02510 and RR42_RS02515 are separated by 18 nucleotides
RR42_RS02495: RR42_RS02495 - cardiolipin synthase; exported protein, at 559,553 to 560,872
_RS02495
RR42_RS02500: RR42_RS02500 - TetR family transcriptional regulator, at 561,242 to 561,832
_RS02500
RR42_RS02505: RR42_RS02505 - acyl-CoA dehydrogenase, at 561,906 to 563,693
_RS02505
RR42_RS02510: RR42_RS02510 - 3-hydroxyacyl-CoA dehydrogenase, at 563,889 to 566,315
_RS02510
RR42_RS02515: RR42_RS02515 - acetyl-CoA acetyltransferase, at 566,334 to 567,533
_RS02515
Group
Condition
RR42
_RS02495
RR42
_RS02500
RR42
_RS02505
RR42
_RS02510
RR42
_RS02515
nitrogen source
nitrite (N)
-0.2
-5.5
-0.2
+0.2
N.D.
lb
LB
+0.2
-5.0
+0.1
+0.1
N.D.
carbon source
L-Tryptophan (C)
-0.0
-4.2
+0.1
-0.3
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
-3.1
-1.3
+0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-1.7
-2.4
-0.1
-0.1
N.D.
carbon source
L-Phenylalanine (C)
+0.1
-4.1
+0.1
-0.2
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.1
-1.9
-2.1
-0.2
N.D.
nitrogen source
L-Glutamine (N)
+0.2
-4.3
-0.0
+0.2
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
-3.8
-0.0
-0.1
N.D.
nitrogen source
L-Valine (N)
-0.0
-3.8
-0.2
+0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-3.5
+0.1
+0.1
N.D.
nitrogen source
Glycine (N)
+0.1
-3.6
-0.1
+0.2
N.D.
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-3.1
-0.7
+0.2
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-3.0
+0.1
-0.0
N.D.
carbon source
L-Glutamine (C)
+0.1
-3.3
+0.1
-0.0
N.D.
nitrogen source
L-Lysine (N)
-0.1
-2.8
-0.1
+0.0
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-1.4
-1.0
-0.2
-0.1
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
-2.8
+0.0
-0.0
N.D.
carbon source
L-Histidine (C)
-0.0
-2.6
+0.1
-0.1
N.D.
nitrogen source
L-Serine (N)
+0.2
-2.7
+0.0
-0.1
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
-2.2
+0.1
-0.1
N.D.
nitrogen source
Glucuronamide (N)
+0.0
-2.8
+0.1
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
+0.4
-2.7
-0.4
+0.2
N.D.
carbon source
succinate (C)
+0.1
-2.3
+0.0
-0.1
N.D.
nitrogen source
L-Phenylalanine (N)
+0.0
-2.4
+0.0
+0.1
N.D.
carbon source
L-Histidine (C)
+0.2
-2.2
+0.1
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
-2.0
+0.1
+0.4
N.D.
carbon source
Octanoic (C)
+1.0
-1.6
+0.1
-0.2
N.D.
carbon source
adipate (C)
-0.1
+3.7
-0.1
-0.1
N.D.
carbon source
adipate (C)
-0.3
+3.3
+0.3
+0.4
N.D.
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