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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02435 and RR42_RS02440 are separated by 14 nucleotides
RR42_RS02440 and RR42_RS02445 are separated by 43 nucleotides
RR42_RS02445 and RR42_RS02450 are separated by 65 nucleotides
RR42_RS02450 and RR42_RS02455 are separated by 33 nucleotides
RR42_RS02435: RR42_RS02435 - FmdB family transcriptional regulator, at 548,435 to 548,794
_RS02435
RR42_RS02440: RR42_RS02440 - membrane protein, at 548,809 to 549,507
_RS02440
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
RR42_RS02450: RR42_RS02450 - MFS transporter, at 551,422 to 552,729
_RS02450
RR42_RS02455: RR42_RS02455 - agmatinase, at 552,763 to 553,749
_RS02455
Group
Condition
RR42
_RS02435
RR42
_RS02440
RR42
_RS02445
RR42
_RS02450
RR42
_RS02455
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
-4.2
N.D.
-0.1
-0.4
lb
LB
N.D.
-3.2
N.D.
+0.0
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-3.0
N.D.
-0.0
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-3.0
N.D.
+0.0
+0.0
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-2.8
N.D.
+0.1
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
N.D.
-3.1
N.D.
+0.1
+0.2
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-2.4
N.D.
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
-2.7
N.D.
+0.1
-0.0
carbon source
Dodecandioic (C)
N.D.
-2.0
N.D.
-0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-1.4
N.D.
-0.2
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-1.6
N.D.
-0.2
-0.2
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-2.3
N.D.
-0.0
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-1.6
N.D.
-0.2
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-1.5
N.D.
+0.0
-0.3
carbon source
Azelaic (C)
N.D.
-1.9
N.D.
+0.2
-0.1
stress
R2A with Chlorite 4 mM
N.D.
-1.5
N.D.
+0.1
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-1.5
N.D.
+0.0
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-1.5
N.D.
+0.3
-0.4
r2a
R2A
N.D.
-1.3
N.D.
+0.1
-0.2
carbon source
Suberic (C)
N.D.
-1.2
N.D.
-0.1
-0.2
carbon source
Octanoic (C)
N.D.
-1.4
N.D.
+0.1
-0.2
carbon source
Protocatechuic Acid (C)
N.D.
-1.4
N.D.
-0.2
+0.1
carbon source
Heptanoic (C)
N.D.
-1.3
N.D.
+0.1
-0.2
stress
R2A with sodium fluoride 100 mM
N.D.
-1.6
N.D.
+0.1
+0.0
carbon source
Pimelic (C)
N.D.
-1.2
N.D.
-0.1
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-1.6
N.D.
+0.3
+0.2
carbon source
Pimelic (C)
N.D.
-1.3
N.D.
+0.2
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.9
N.D.
+0.2
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+1.7
N.D.
+0.3
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+2.2
N.D.
-0.1
+0.1
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RR42_RS02445
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