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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02315 and RR42_RS02320 are separated by 243 nucleotides
RR42_RS02320 and RR42_RS02325 are separated by 12 nucleotides
RR42_RS02325 and RR42_RS02330 are separated by 34 nucleotides
RR42_RS02330 and RR42_RS02335 are separated by 14 nucleotides
RR42_RS02315: RR42_RS02315 - threonine dehydratase, at 518,349 to 519,875
_RS02315
RR42_RS02320: RR42_RS02320 - trehalose phosphatase, at 520,119 to 520,904
_RS02320
RR42_RS02325: RR42_RS02325 - glucoamylase, at 520,917 to 522,755
_RS02325
RR42_RS02330: RR42_RS02330 - trehalose-6-phosphate synthase, at 522,790 to 524,190
_RS02330
RR42_RS02335: RR42_RS02335 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 524,205 to 524,810
_RS02335
Group
Condition
RR42
_RS02315
RR42
_RS02320
RR42
_RS02325
RR42
_RS02330
RR42
_RS02335
nitrogen source
nitrite (N)
-0.5
-4.8
+0.3
-0.7
N.D.
carbon source
Pimelic (C)
-0.0
-4.3
+0.1
-0.8
N.D.
carbon source
Pimelic (C)
+0.0
-3.8
+0.2
-0.9
N.D.
carbon source
adipate (C)
+0.6
-2.5
+0.4
-1.7
N.D.
carbon source
adipate (C)
+0.3
-1.7
+0.3
-1.7
N.D.
carbon source
Disodium Glutarate (C)
+0.0
-2.2
+0.1
-0.6
N.D.
nitrogen source
L-Citrulline (N)
-0.0
-2.1
-0.2
-0.1
N.D.
nitrogen source
L-Tryptophan (N)
-0.0
-2.1
-0.0
-0.2
N.D.
carbon source
Disodium Glutarate (C)
-0.2
-0.9
-0.0
-0.9
N.D.
nitrogen source
L-Serine (N)
+0.0
-1.1
-0.1
-0.7
N.D.
nitrogen source
L-Valine (N)
+0.1
-1.6
+0.0
-0.4
N.D.
nitrogen source
L-Leucine (N)
+0.0
-1.8
+0.0
-0.1
N.D.
nitrogen source
L-Lysine (N)
+0.0
-1.5
-0.0
-0.2
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-1.2
+0.0
-0.5
N.D.
nitrogen source
casaminos (N)
-0.4
-0.9
-0.0
-0.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.8
-0.0
-0.2
N.D.
carbon source
Valeric (C)
-0.8
-0.6
-0.2
-0.0
N.D.
nitrogen source
D-Alanine (N)
-0.1
-1.4
+0.2
-0.2
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
-1.4
+0.0
-0.0
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
-0.7
-0.3
-0.2
N.D.
carbon source
Valeric (C)
-1.0
-0.5
+0.0
-0.0
N.D.
nitrogen source
L-Valine (N)
+0.3
-1.6
-0.0
-0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
-1.4
+0.0
-0.0
N.D.
carbon source
Hexanoic (C)
-0.9
-0.4
-0.0
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
-0.9
-0.3
-0.1
N.D.
nitrogen source
L-Leucine (N)
-0.2
-1.1
+0.1
-0.0
N.D.
nitrogen source
L-Serine (N)
+0.2
-0.9
-0.1
-0.2
N.D.
carbon source
succinate (C)
+0.0
-0.7
+0.3
-0.5
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.4
-0.6
+0.3
-0.4
N.D.
carbon source
Octanoic (C)
-0.3
+0.8
-0.1
+0.5
N.D.
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