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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02285 and RR42_RS02290 overlap by 4 nucleotides
RR42_RS02290 and RR42_RS02295 overlap by 4 nucleotides
RR42_RS02295 and RR42_RS02300 are separated by 123 nucleotides
RR42_RS02300 and RR42_RS02305 are separated by 284 nucleotides
RR42_RS02285: RR42_RS02285 - mannose-1-phosphate guanyltransferase, at 511,869 to 513,047
_RS02285
RR42_RS02290: RR42_RS02290 - multidrug ABC transporter ATP-binding protein, at 513,044 to 514,057
_RS02290
RR42_RS02295: RR42_RS02295 - secretion protein HlyD, at 514,054 to 515,007
_RS02295
RR42_RS02300: RR42_RS02300 - hypothetical protein, at 515,131 to 515,802
_RS02300
RR42_RS02305: RR42_RS02305 - porin, at 516,087 to 517,421
_RS02305
Group
Condition
RR42
_RS02285
RR42
_RS02290
RR42
_RS02295
RR42
_RS02300
RR42
_RS02305
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
+0.2
+0.4
+0.6
-3.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
+0.3
-0.1
-0.6
-1.2
stress
R2A with Lomefloxacin 0.001 mM
-0.5
-0.5
+0.2
-0.6
-0.0
stress
R2A with Zinc 0.1 mM
-0.3
-0.1
-0.5
-0.2
-0.3
nitrogen source
Glucuronamide (N)
-0.3
-0.1
-0.1
-0.5
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.4
-0.3
-0.1
-0.1
nitrogen source
casaminos (N)
-0.2
-0.1
-0.1
-0.3
-0.3
temperature
R2A 23C
-0.4
+0.2
-0.2
-0.2
-0.3
carbon source
D,L-Lactate (C)
-0.2
-0.4
-0.2
+0.0
+0.2
carbon source
L-Proline (C)
+0.3
-0.4
-0.1
-0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.3
+0.0
+0.5
-0.6
lb
LB
-0.3
+0.5
+0.2
-0.1
-0.7
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.5
+0.4
-0.3
+0.2
nitrogen source
L-Tryptophan (N)
+0.4
-0.1
-0.2
-0.2
-0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.0
+0.1
+0.1
-0.6
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.2
+0.3
+0.4
-0.3
carbon source
a-Ketoglutaric (C)
+0.3
+0.3
-0.3
+0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
+0.0
+0.1
-0.4
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
+0.1
+0.3
+0.2
-0.5
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-1.2
-1.0
+0.2
+2.6
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.2
-0.1
+0.3
+0.2
+0.2
carbon source
D,L-Lactate (C)
+0.3
+0.3
-0.4
+0.2
+0.0
carbon source
propionate (C)
+0.3
+0.1
-0.1
+0.3
-0.1
carbon source
adipate (C)
-0.1
+0.2
-0.2
+0.3
+0.3
carbon source
Dodecandioic (C)
+0.2
+0.3
+0.0
+0.3
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.7
-0.2
-0.0
+0.2
nitrogen source
L-Isoleucine (N)
+0.2
+0.4
-0.2
+0.3
-0.0
carbon source
pyruvate (C)
+0.4
+0.3
+0.2
-0.2
+0.0
nitrogen source
L-Leucine (N)
+0.2
+0.4
+0.1
+0.3
-0.1
r2a
R2A
+0.1
+0.4
+0.4
+0.3
+0.1
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