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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02220 and RR42_RS02225 are separated by 27 nucleotides
RR42_RS02225 and RR42_RS02230 are separated by 67 nucleotides
RR42_RS02230 and RR42_RS02235 overlap by 4 nucleotides
RR42_RS02235 and RR42_RS02240 overlap by 1 nucleotides
RR42_RS02220: RR42_RS02220 - LysR family transcriptional regulator, at 491,812 to 492,753
_RS02220
RR42_RS02225: RR42_RS02225 - ABC transporter substrate-binding protein, at 492,781 to 493,764
_RS02225
RR42_RS02230: RR42_RS02230 - sulfolactate dehydrogenase, at 493,832 to 494,836
_RS02230
RR42_RS02235: RR42_RS02235 - 3-phosphoglycerate dehydrogenase, at 494,833 to 495,768
_RS02235
RR42_RS02240: RR42_RS02240 - D-galactarate dehydratase, at 495,768 to 496,943
_RS02240
Group
Condition
RR42
_RS02220
RR42
_RS02225
RR42
_RS02230
RR42
_RS02235
RR42
_RS02240
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-1.6
-0.4
-0.4
-0.0
carbon source
adipate (C)
-0.2
-0.2
-0.4
+0.0
-1.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.2
-0.5
-1.2
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-0.5
-0.1
-0.5
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-1.1
-0.4
+0.1
-0.1
carbon source
Heptanoic (C)
-0.1
+0.2
-0.6
-0.5
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.9
-0.0
-0.3
+0.2
carbon source
Octanoic (C)
-0.1
-0.2
+0.2
-0.9
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.3
-1.2
+0.5
-0.6
+0.2
stress
R2A with Sisomicin 0.035 mg/ml
-0.2
-0.7
-0.1
+0.1
+0.3
carbon source
Hexanoic (C)
-0.1
-0.4
+0.4
-0.6
-0.0
carbon source
adipate (C)
+0.0
+0.7
-0.5
-0.3
-0.6
nitrogen source
nitrite (N)
-0.2
+0.4
-0.2
-0.9
+0.2
carbon source
Protocatechuic Acid (C)
-0.1
+0.4
-0.1
+0.1
-0.9
r2a
R2A
+0.2
-0.3
+0.3
-0.7
-0.0
temperature
R2A 37C
+0.1
-0.3
-0.3
+0.4
-0.3
carbon source
Hexanoic (C)
+0.1
+0.5
-0.5
-0.7
+0.2
carbon source
L-Alanine (C)
-0.3
+0.7
-0.3
+0.2
-0.6
carbon source
L-Tryptophan (C)
-0.0
+0.1
+0.2
+0.4
-0.9
carbon source
Suberic (C)
-0.1
+0.3
-0.4
+0.4
-0.5
carbon source
L-Alanine (C)
+0.1
+0.5
-0.4
+0.3
-0.6
carbon source
L-Phenylalanine (C)
+0.1
+0.7
-0.0
-0.6
-0.1
r2a
R2A
+0.2
-0.7
+0.6
-0.2
+0.1
temperature
R2A 23C
+0.3
-0.7
-0.0
+0.3
+0.1
carbon source
L-Leucine (C)
+0.0
+0.6
+0.2
-0.1
-0.5
stress
R2A with Cephalothin 0.25 mg/ml
+0.1
-0.6
+0.2
+0.4
+0.2
carbon source
L-Glutamine (C)
+0.1
-0.1
+0.2
+0.6
-0.4
carbon source
D-Fructose (C)
+0.1
+0.4
+0.1
+0.6
-0.4
stress
R2A with copper (II) chloride 0.25 mM
+0.3
-0.1
+0.1
+0.9
-0.4
carbon source
pyruvate (C)
+0.3
+0.6
+0.3
+0.0
-0.2
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