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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02160 and RR42_RS02165 are separated by 102 nucleotides
RR42_RS02165 and RR42_RS02170 are separated by 215 nucleotides
RR42_RS02170 and RR42_RS02175 are separated by 20 nucleotides
RR42_RS02175 and RR42_RS02180 are separated by 8 nucleotides
RR42_RS02160: RR42_RS02160 - LacI family transcriptional regulator, at 480,232 to 481,215
_RS02160
RR42_RS02165: RR42_RS02165 - LysR family transcriptional regulator, at 481,318 to 482,256
_RS02165
RR42_RS02170: RR42_RS02170 - hypothetical protein, at 482,472 to 483,209
_RS02170
RR42_RS02175: RR42_RS02175 - acetolactate synthase, at 483,230 to 484,855
_RS02175
RR42_RS02180: RR42_RS02180 - ABC transporter substrate-binding protein, at 484,864 to 485,850
_RS02180
Group
Condition
RR42
_RS02160
RR42
_RS02165
RR42
_RS02170
RR42
_RS02175
RR42
_RS02180
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.2
-0.4
-0.5
-0.1
nitrogen source
L-Serine (N)
-0.1
-0.3
+0.0
-0.4
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.6
-0.3
+0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.1
-0.2
+0.2
-0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
-0.2
-0.1
-0.4
+0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.0
+0.2
+0.2
-0.8
-0.0
carbon source
L-Histidine (C)
-0.2
-0.2
+0.3
-0.2
+0.1
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.3
-0.3
-0.1
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
+0.4
-0.1
-0.5
-0.0
carbon source
L-Glutamine (C)
+0.0
+0.6
-0.2
-0.1
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
+0.4
+0.1
-0.2
-0.2
lb
LB
-0.3
+0.7
-0.2
+0.3
-0.3
carbon source
Pimelic (C)
-0.2
+0.2
+0.2
+0.3
-0.1
carbon source
D,L-Lactate (C)
+0.1
+0.4
-0.1
+0.2
-0.1
carbon source
Trisodium citrate (C)
-0.2
+0.4
-0.1
+0.2
+0.2
carbon source
Protocatechuic Acid (C)
-0.3
+0.9
+0.3
-0.4
+0.0
carbon source
Ethanol (C)
+0.0
+0.6
-0.2
+0.2
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
+0.6
-0.1
-0.1
+0.3
carbon source
L-Histidine (C)
+0.1
+0.6
-0.4
+0.1
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.6
-0.1
+0.2
-0.1
carbon source
Protocatechuic Acid (C)
-0.0
+0.6
+0.4
+0.1
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.5
+0.0
+0.4
-0.1
carbon source
Azelaic (C)
+0.1
+0.5
+0.1
+0.4
-0.1
carbon source
Disodium Glutarate (C)
-0.1
+0.3
-0.0
+0.5
+0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
+0.5
+0.2
+0.3
-0.1
carbon source
Suberic (C)
+0.0
+0.7
+0.0
+0.4
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.4
+0.1
+0.5
+0.3
carbon source
Dodecandioic (C)
+0.2
+0.5
+0.3
+0.4
-0.2
nitrogen source
L-Glutamine (N)
+0.1
+0.5
+0.2
+0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.3
+0.1
+1.0
+0.0
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