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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02035 and RR42_RS02040 are separated by 140 nucleotides
RR42_RS02040 and RR42_RS02045 are separated by 283 nucleotides
RR42_RS02045 and RR42_RS02050 are separated by 99 nucleotides
RR42_RS02050 and RR42_RS02055 are separated by 6 nucleotides
RR42_RS02035: RR42_RS02035 - hypothetical protein, at 452,266 to 454,149
_RS02035
RR42_RS02040: RR42_RS02040 - formamidopyrimidine-DNA glycosylase, at 454,290 to 455,171
_RS02040
RR42_RS02045: RR42_RS02045 - GTPase, at 455,455 to 457,398
_RS02045
RR42_RS02050: RR42_RS02050 - adenine glycosylase, at 457,498 to 458,667
_RS02050
RR42_RS02055: RR42_RS02055 - ATP-dependent protease, at 458,674 to 459,351
_RS02055
Group
Condition
RR42
_RS02035
RR42
_RS02040
RR42
_RS02045
RR42
_RS02050
RR42
_RS02055
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-2.2
+0.2
-2.9
-0.3
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.6
+0.0
-2.8
+0.1
-0.2
nitrogen source
nitrite (N)
-0.3
+0.0
-3.0
-0.1
-0.0
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
-3.7
+0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.2
-2.4
-0.3
-0.0
nitrogen source
L-Glutamine (N)
-0.6
+0.0
-1.5
-0.5
+0.1
carbon source
a-Ketoglutaric (C)
-0.1
+0.0
-2.2
-0.3
-0.0
nitrogen source
L-Leucine (N)
-0.4
+0.0
-1.8
-0.6
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.1
-2.1
+0.2
-0.2
nitrogen source
L-Valine (N)
-0.4
+0.1
-1.8
-0.2
+0.1
nitrogen source
D-Alanine (N)
-0.3
+0.2
-2.0
+0.2
-0.2
nitrogen source
L-Leucine (N)
-0.4
+0.3
-1.9
-0.2
+0.1
stress
R2A with Zinc 0.1 mM
-1.1
+0.2
-0.5
-0.7
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.2
-2.2
-0.1
+0.2
nitrogen source
nitrate (N)
-0.2
+0.2
-2.1
+0.2
+0.1
carbon source
L-Alanine (C)
+0.2
-0.0
-2.2
+0.2
+0.1
nitrogen source
Glucuronamide (N)
-0.2
+0.2
-1.6
-0.4
+0.4
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-2.5
+0.3
+0.3
nitrogen source
D-Alanine (N)
+0.4
+0.3
-2.1
-0.2
+0.3
nitrogen source
L-Valine (N)
+0.1
+0.1
-1.9
+0.3
+0.0
nitrogen source
Glycine (N)
-0.3
+0.3
-1.3
-0.3
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
-0.1
-1.7
+0.1
+0.1
lb
LB
+0.8
+0.2
-1.9
-0.1
-0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.5
+0.0
+0.8
+0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.6
+0.1
+1.9
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.1
+2.6
-0.2
-0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.2
-0.2
+2.7
-0.2
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.3
+0.3
+2.3
+0.2
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.1
+3.4
-0.1
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.2
-0.2
+6.7
+0.1
+0.4
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