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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01985 and RR42_RS01990 are separated by 167 nucleotides
RR42_RS01990 and RR42_RS01995 are separated by 217 nucleotides
RR42_RS01995 and RR42_RS02000 are separated by 69 nucleotides
RR42_RS02000 and RR42_RS02005 are separated by 99 nucleotides
RR42_RS01985: RR42_RS01985 - zinc protease, at 444,470 to 445,831
_RS01985
RR42_RS01990: RR42_RS01990 - methyltransferase, at 445,999 to 446,538
_RS01990
RR42_RS01995: RR42_RS01995 - phosphopantetheine adenylyltransferase, at 446,756 to 447,244
_RS01995
RR42_RS02000: RR42_RS02000 - ferredoxin, at 447,314 to 447,574
_RS02000
RR42_RS02005: RR42_RS02005 - peptidyl-tRNA hydrolase, at 447,674 to 448,267
_RS02005
Group
Condition
RR42
_RS01985
RR42
_RS01990
RR42
_RS01995
RR42
_RS02000
RR42
_RS02005
carbon source
Octanoic (C)
-4.7
-1.3
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
-4.7
-0.9
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-4.1
-1.2
N.D.
N.D.
N.D.
carbon source
Dodecandioic (C)
-5.0
-0.2
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-3.9
-1.1
N.D.
N.D.
N.D.
carbon source
Dodecandioic (C)
-4.6
-0.4
N.D.
N.D.
N.D.
carbon source
Heptanoic (C)
-4.3
-0.1
N.D.
N.D.
N.D.
carbon source
Heptanoic (C)
-3.9
-0.0
N.D.
N.D.
N.D.
stress
R2A with Zinc 0.1 mM
-3.8
+0.3
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-3.5
+0.0
N.D.
N.D.
N.D.
carbon source
Hexanoic (C)
-2.8
-0.4
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-3.1
-0.0
N.D.
N.D.
N.D.
stress
R2A with nitrate 150 mM
-1.9
-1.0
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-3.1
+0.2
N.D.
N.D.
N.D.
carbon source
Hexanoic (C)
-2.6
-0.0
N.D.
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.5
-1.7
N.D.
N.D.
N.D.
carbon source
Valeric (C)
-0.7
-1.0
N.D.
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-1.8
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.8
-0.7
N.D.
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-1.4
-0.1
N.D.
N.D.
N.D.
carbon source
Valeric (C)
-1.0
-0.4
N.D.
N.D.
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.6
-0.8
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.7
-0.6
N.D.
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-1.2
-0.1
N.D.
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
-1.2
+0.0
N.D.
N.D.
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
-1.3
N.D.
N.D.
N.D.
stress
R2A with Chlorite 4 mM
-0.6
-0.6
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.7
-0.9
N.D.
N.D.
N.D.
lb
LB
+0.9
-0.4
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+1.2
-0.5
N.D.
N.D.
N.D.
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