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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01950 and RR42_RS01955 are separated by 85 nucleotides
RR42_RS01955 and RR42_RS01960 are separated by 362 nucleotides
RR42_RS01960 and RR42_RS01965 are separated by 208 nucleotides
RR42_RS01965 and RR42_RS01970 are separated by 7 nucleotides
RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640
_RS01950
RR42_RS01955: RR42_RS01955 - nitrate transporter, at 437,726 to 439,045
_RS01955
RR42_RS01960: RR42_RS01960 - transcriptional regulator, at 439,408 to 440,061
_RS01960
RR42_RS01965: RR42_RS01965 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 440,270 to 440,971
_RS01965
RR42_RS01970: RR42_RS01970 - maleylacetoacetate isomerase, at 440,979 to 441,623
_RS01970
Group
Condition
RR42
_RS01950
RR42
_RS01955
RR42
_RS01960
RR42
_RS01965
RR42
_RS01970
carbon source
L-Phenylalanine (C)
+0.2
+0.1
+0.2
-0.1
-4.2
nitrogen source
nitrite (N)
-0.0
-0.2
-4.4
+0.2
+1.2
nitrogen source
L-Phenylalanine (N)
+0.0
+0.0
-0.3
+0.1
-2.9
nitrogen source
nitrate (N)
-0.0
+0.1
-3.2
+0.2
+0.3
stress
R2A with Cobalt chloride 0.5 mM
-0.5
+0.1
-0.1
-0.4
-1.2
r2a
R2A
-0.1
-0.1
-0.4
+0.1
-0.6
carbon source
adipate (C)
-0.0
+0.1
-1.0
-0.1
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
+0.0
+0.0
-0.6
-0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.1
-0.1
+0.4
-0.2
-1.0
r2a
R2A
+0.3
-0.0
-0.2
-0.3
-0.6
stress
R2A with Chloride 300 mM
+0.3
+0.0
-0.4
-0.1
-0.5
carbon source
Hexanoic (C)
-0.1
+0.3
-0.3
-0.3
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
-0.3
-0.1
-0.2
+0.4
nitrogen source
L-Serine (N)
-0.3
-0.8
+0.5
-0.0
+0.4
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
+0.2
+0.3
-0.2
-0.6
r2a
R2A
-0.0
+0.2
+0.3
+0.1
-0.6
carbon source
Protocatechuic Acid (C)
-0.2
-0.2
+0.3
-0.1
+0.4
nitrogen source
L-Serine (N)
+0.1
-0.8
+0.3
+0.0
+0.4
nitrogen source
L-Tryptophan (N)
-0.2
-0.2
-0.2
+0.2
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
+0.2
-0.5
+0.1
+1.0
stress
R2A with A22 0.01 mg/ml
-0.3
+0.0
-0.2
-0.0
+0.9
nitrogen source
L-Threonine (N)
+0.2
+0.0
-0.3
-0.1
+0.9
stress
R2A with Lomefloxacin 0.001 mM
-0.3
+0.0
+0.1
+0.2
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.1
+0.2
-0.1
+0.7
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
+0.1
-0.2
-0.0
+1.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.1
+0.2
+0.2
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.1
+0.2
+0.1
+0.9
lb
LB
+0.0
+0.1
+0.5
+0.3
+0.7
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.0
+0.5
+0.3
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-0.0
+0.1
+0.3
+1.5
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