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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01820 and RR42_RS01825 are separated by 161 nucleotides
RR42_RS01825 and RR42_RS01830 are separated by 140 nucleotides
RR42_RS01830 and RR42_RS01835 are separated by 118 nucleotides
RR42_RS01835 and RR42_RS01840 are separated by 164 nucleotides
RR42_RS01820: RR42_RS01820 - peptidase S41, at 413,123 to 414,712
_RS01820
RR42_RS01825: RR42_RS01825 - phosphoglyceromutase, at 414,874 to 415,620
_RS01825
RR42_RS01830: RR42_RS01830 - sulfurtransferase, at 415,761 to 416,174
_RS01830
RR42_RS01835: RR42_RS01835 - glutaredoxin, at 416,293 to 416,550
_RS01835
RR42_RS01840: RR42_RS01840 - preprotein translocase subunit SecB, at 416,715 to 417,233
_RS01840
Group
Condition
RR42
_RS01820
RR42
_RS01825
RR42
_RS01830
RR42
_RS01835
RR42
_RS01840
stress
R2A with copper (II) chloride 0.25 mM
-1.5
N.D.
-3.5
-0.4
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-3.4
N.D.
-2.2
+0.4
N.D.
stress
R2A with Cobalt chloride 0.5 mM
-3.3
N.D.
-0.7
+0.1
N.D.
nitrogen source
Glycine (N)
-0.9
N.D.
-2.0
-0.6
N.D.
nitrogen source
D-Alanine (N)
-1.7
N.D.
-1.5
-0.2
N.D.
stress
R2A with nitrate 150 mM
-1.4
N.D.
-1.4
-0.3
N.D.
stress
R2A with A22 0.01 mg/ml
-0.9
N.D.
-1.5
-0.3
N.D.
carbon source
Pimelic (C)
+0.3
N.D.
-2.2
-0.9
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
-1.7
N.D.
-0.7
-0.3
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
N.D.
-1.9
-0.3
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
-1.2
N.D.
-1.0
-0.4
N.D.
carbon source
Protocatechuic Acid (C)
-1.0
N.D.
+0.6
-2.1
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.8
N.D.
-1.3
-0.3
N.D.
nitrogen source
L-Glutamine (N)
-1.4
N.D.
-0.7
-0.3
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.9
N.D.
-1.0
-0.3
N.D.
carbon source
L-Proline (C)
-1.0
N.D.
-0.8
-0.5
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-3.6
N.D.
+1.6
-0.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-2.2
N.D.
+0.5
-0.4
N.D.
stress
R2A with nitrate 200 mM
-1.8
N.D.
-0.4
+0.1
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
-2.4
N.D.
+1.0
+0.0
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-2.6
N.D.
+1.5
-0.3
N.D.
carbon source
adipate (C)
+0.9
N.D.
-1.7
-0.5
N.D.
carbon source
Protocatechuic Acid (C)
-1.4
N.D.
+0.9
-0.6
N.D.
carbon source
adipate (C)
+1.2
N.D.
-1.2
+0.2
N.D.
stress
R2A with Chlorite 4 mM
-1.2
N.D.
+0.8
+0.7
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.7
N.D.
+2.3
+0.8
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
N.D.
+1.8
+0.7
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
N.D.
+2.2
+0.7
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
N.D.
+2.3
+1.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
N.D.
+2.3
+1.1
N.D.
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RR42_RS01830
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