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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01485 and RR42_RS01490 are separated by 42 nucleotides
RR42_RS01490 and RR42_RS01495 are separated by 17 nucleotides
RR42_RS01495 and RR42_RS01500 are separated by 322 nucleotides
RR42_RS01500 and RR42_RS01505 are separated by 149 nucleotides
RR42_RS01485: RR42_RS01485 - phosphonate transporter, at 335,712 to 336,077
_RS01485
RR42_RS01490: RR42_RS01490 - histidine kinase, at 336,120 to 337,553
_RS01490
RR42_RS01495: RR42_RS01495 - diguanylate cyclase, at 337,571 to 339,352
_RS01495
RR42_RS01500: RR42_RS01500 - hypothetical protein, at 339,675 to 340,094
_RS01500
RR42_RS01505: RR42_RS01505 - tRNA-Cys, at 340,244 to 340,318
_RS01505
Group
Condition
RR42
_RS01485
RR42
_RS01490
RR42
_RS01495
RR42
_RS01500
RR42
_RS01505
lb
LB
-6.1
-0.4
-0.1
+0.2
+0.1
stress
R2A with Chloride 300 mM
-0.8
-0.2
-0.0
-0.4
-1.7
stress
R2A with Cobalt chloride 0.5 mM
-3.7
+0.3
+0.1
+0.5
-0.2
carbon source
D-Fructose (C)
-1.4
-0.2
-0.2
-0.2
-0.9
carbon source
L-Asparagine (C)
+0.1
-0.3
+0.1
-0.9
-1.7
carbon source
Pimelic (C)
-0.2
-0.1
-0.1
-0.3
-2.0
nitrogen source
L-Glutamine (N)
-1.4
-0.1
+0.0
-0.1
-1.0
carbon source
L-Glutamine (C)
-1.4
-0.2
+0.0
-0.0
-1.0
carbon source
L-Proline (C)
-0.9
-0.1
-0.1
-0.3
-1.1
carbon source
a-Ketoglutaric (C)
-1.5
-0.2
+0.1
-0.3
-0.5
carbon source
D-Gluconic Acid (C)
+0.2
+0.0
-0.2
-0.4
-2.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
-0.2
-0.2
-0.7
-1.6
carbon source
Carbon source Phenylacetic 2.5 mM
-1.1
+0.1
+0.2
-0.1
-1.3
carbon source
L-Phenylalanine (C)
-1.2
-0.2
-0.2
-0.2
-0.6
carbon source
D,L-Lactate (C)
-0.3
-0.0
+0.0
+0.1
-1.8
carbon source
Pimelic (C)
-0.3
-0.0
+0.0
+0.3
-1.6
carbon source
L-Tryptophan (C)
+0.6
-0.2
-0.1
-0.7
-1.2
stress
R2A with Nickel (II) chloride 0.35 mM
-2.1
-0.2
+0.1
+0.4
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-1.9
-0.0
+0.0
+0.5
-0.1
nitrogen source
L-Serine (N)
+0.4
+0.0
-0.1
-0.8
-0.9
stress
R2A with D-Cycloserine 0.5 mg/ml
-2.3
+0.0
+0.3
+0.0
+1.5
carbon source
Heptanoic (C)
+0.5
+0.3
+0.3
+0.2
-1.6
carbon source
Azelaic (C)
+1.0
-0.3
-0.1
+0.3
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.3
+0.1
+0.4
-0.2
+1.2
stress
R2A with Chloride 300 mM
+1.1
+0.2
-0.1
+0.6
-1.3
stress
R2A with Zinc 0.1 mM
-1.0
+0.2
+0.1
+0.5
+0.7
stress
R2A with Lomefloxacin 0.001 mM
-0.6
-0.2
+0.2
-0.3
+1.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.8
+0.0
-0.4
-0.3
+1.1
stress
R2A with copper (II) chloride 0.25 mM
-0.6
+0.6
+0.1
+0.2
+1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.4
-0.0
+0.2
+1.6
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