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Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01445 and RR42_RS01450 are separated by 27 nucleotides
RR42_RS01450 and RR42_RS01455 are separated by 257 nucleotides
RR42_RS01455 and RR42_RS01460 are separated by 120 nucleotides
RR42_RS01460 and RR42_RS01465 are separated by 644 nucleotides
RR42_RS01445: RR42_RS01445 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 325,061 to 326,002
_RS01445
RR42_RS01450: RR42_RS01450 - hypothetical protein, at 326,030 to 326,896
_RS01450
RR42_RS01455: RR42_RS01455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 327,154 to 328,515
_RS01455
RR42_RS01460: RR42_RS01460 - glucosamine--fructose-6-phosphate aminotransferase, at 328,636 to 330,474
_RS01460
RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086
_RS01465
Group
Condition
RR42
_RS01445
RR42
_RS01450
RR42
_RS01455
RR42
_RS01460
RR42
_RS01465
carbon source
Disodium Glutarate (C)
-0.2
-1.4
N.D.
N.D.
-0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-1.1
N.D.
N.D.
+0.0
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-1.2
N.D.
N.D.
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
-0.8
N.D.
N.D.
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-1.1
N.D.
N.D.
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.4
N.D.
N.D.
-0.3
carbon source
L-Asparagine (C)
-0.0
-0.5
N.D.
N.D.
-0.3
carbon source
succinate (C)
-0.0
-0.8
N.D.
N.D.
+0.0
nitrogen source
L-Lysine (N)
-0.0
-0.7
N.D.
N.D.
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.6
N.D.
N.D.
+0.0
carbon source
D-Gluconic Acid (C)
-0.1
-0.7
N.D.
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.4
N.D.
N.D.
-0.1
carbon source
D-Lactate (C)
-0.0
-0.8
N.D.
N.D.
+0.0
carbon source
Pimelic (C)
-0.0
-0.9
N.D.
N.D.
+0.2
carbon source
L-Tryptophan (C)
-0.0
-0.8
N.D.
N.D.
+0.1
stress
R2A with nitrate 150 mM
+0.0
-0.7
N.D.
N.D.
+0.0
carbon source
butyrate (C)
+0.1
-0.7
N.D.
N.D.
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-0.8
N.D.
N.D.
+0.1
carbon source
D,L-Lactate (C)
+0.0
-0.6
N.D.
N.D.
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.7
N.D.
N.D.
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.7
+0.1
N.D.
N.D.
+0.2
carbon source
Protocatechuic Acid (C)
+0.2
-0.4
N.D.
N.D.
+0.2
nitrogen source
L-Leucine (N)
+0.3
-0.5
N.D.
N.D.
+0.2
nitrogen source
L-Glutamine (N)
-0.2
+0.3
N.D.
N.D.
+0.3
carbon source
D-Lactate (C)
-0.1
+0.8
N.D.
N.D.
-0.1
temperature
R2A 23C
-0.1
+0.6
N.D.
N.D.
+0.1
nitrogen source
L-Leucine (N)
-0.0
+0.7
N.D.
N.D.
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
+0.2
N.D.
N.D.
+0.0
nitrogen source
nitrate (N)
+0.1
+0.6
N.D.
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
-0.0
+0.8
N.D.
N.D.
+0.2
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