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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01375 and RR42_RS01380 are separated by 129 nucleotides
RR42_RS01380 and RR42_RS01385 are separated by 62 nucleotides
RR42_RS01385 and RR42_RS01390 are separated by 22 nucleotides
RR42_RS01390 and RR42_RS01395 are separated by 31 nucleotides
RR42_RS01375: RR42_RS01375 - S-adenosyl-L-homocysteine hydrolase, at 311,482 to 312,915
_RS01375
RR42_RS01380: RR42_RS01380 - membrane protein, at 313,045 to 313,398
_RS01380
RR42_RS01385: RR42_RS01385 - 5,10-methylenetetrahydrofolate reductase, at 313,461 to 314,291
_RS01385
RR42_RS01390: RR42_RS01390 - competence protein, at 314,314 to 314,676
_RS01390
RR42_RS01395: RR42_RS01395 - twitching motility protein PilT, at 314,708 to 315,475
_RS01395
Group
Condition
RR42
_RS01375
RR42
_RS01380
RR42
_RS01385
RR42
_RS01390
RR42
_RS01395
nitrogen source
nitrate (N)
N.D.
-2.5
-7.3
-0.1
-0.2
nitrogen source
L-Glutamine (N)
N.D.
-3.2
-6.1
-0.2
+0.4
nitrogen source
L-Tryptophan (N)
N.D.
-1.7
-7.3
+0.2
-0.1
carbon source
L-Leucine (C)
N.D.
-1.9
-6.9
-0.0
+0.0
nitrogen source
L-Valine (N)
N.D.
-1.3
-7.3
-0.1
+0.0
carbon source
pyruvate (C)
N.D.
-1.9
-6.6
+0.0
-0.1
nitrogen source
D-Alanine (N)
N.D.
-1.4
-6.9
-0.0
-0.1
lb
LB
N.D.
-1.5
-5.8
-1.6
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-1.4
-6.6
-0.5
+0.1
nitrogen source
L-Valine (N)
N.D.
-1.7
-6.9
-0.0
+0.2
carbon source
L-Lactate (C)
N.D.
-1.4
-6.9
+0.1
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-2.9
-6.1
+0.3
+0.4
nitrogen source
L-Phenylalanine (N)
N.D.
-1.6
-7.0
+0.4
-0.0
carbon source
L-Malic (C)
N.D.
-1.6
-6.9
+0.1
+0.3
nitrogen source
L-Threonine (N)
N.D.
-1.6
-7.0
+0.1
+0.4
carbon source
L-Glutamine (C)
N.D.
-1.3
-7.0
+0.1
+0.2
carbon source
L-Glutamine (C)
N.D.
-1.5
-6.8
-0.1
+0.4
nitrogen source
L-Leucine (N)
N.D.
-2.1
-6.4
+0.3
+0.3
carbon source
L-Asparagine (C)
N.D.
-1.5
-6.6
+0.1
+0.0
carbon source
succinate (C)
N.D.
-1.5
-6.8
+0.3
+0.1
carbon source
D-Lactate (C)
N.D.
-1.0
-7.0
+0.2
+0.0
carbon source
Ethanol (C)
N.D.
-1.4
-6.7
+0.4
-0.1
carbon source
Dodecandioic (C)
N.D.
-1.8
-6.3
-0.1
+0.5
carbon source
succinate (C)
N.D.
-1.7
-6.2
-0.1
+0.4
nitrogen source
L-Tryptophan (N)
N.D.
-0.9
-7.0
+0.3
+0.1
carbon source
Azelaic (C)
N.D.
-2.0
-6.3
+0.4
+0.3
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
-1.1
-6.7
-0.1
+0.4
carbon source
Dodecandioic (C)
N.D.
-1.8
-6.0
-0.1
+0.5
carbon source
Suberic (C)
N.D.
-1.7
-6.1
+0.2
+0.1
nitrogen source
L-Leucine (N)
N.D.
-0.7
-7.1
+0.3
+0.1
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