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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01350 and RR42_RS01355 overlap by 1 nucleotides
RR42_RS01355 and RR42_RS01360 are separated by 48 nucleotides
RR42_RS01360 and RR42_RS01365 are separated by 4 nucleotides
RR42_RS01365 and RR42_RS01370 are separated by 93 nucleotides
RR42_RS01350: RR42_RS01350 - biotin carboxylase, at 307,764 to 309,137
_RS01350
RR42_RS01355: RR42_RS01355 - biotin attachment protein, at 309,137 to 309,349
_RS01355
RR42_RS01360: RR42_RS01360 - phenylacetic acid degradation protein, at 309,398 to 309,826
_RS01360
RR42_RS01365: RR42_RS01365 - hypothetical protein, at 309,831 to 310,271
_RS01365
RR42_RS01370: RR42_RS01370 - phosphomethylpyrimidine kinase, at 310,365 to 311,195
_RS01370
Group
Condition
RR42
_RS01350
RR42
_RS01355
RR42
_RS01360
RR42
_RS01365
RR42
_RS01370
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-1.2
-0.8
+0.3
N.D.
stress
R2A with Zinc 0.1 mM
-0.9
-0.0
-0.4
-0.5
N.D.
carbon source
Protocatechuic Acid (C)
+0.4
-1.2
-0.3
-0.3
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.4
-0.5
-0.1
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.5
-0.4
-0.2
N.D.
carbon source
Valeric (C)
-0.4
-0.5
-0.6
+0.2
N.D.
temperature
R2A 37C
-0.5
-0.3
+0.1
-0.5
N.D.
lb
LB
-0.6
+0.4
-0.2
-0.5
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.0
-0.3
+0.3
-0.7
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.2
-0.7
-0.4
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
-0.3
-0.4
+0.5
N.D.
carbon source
Dodecandioic (C)
+0.5
-0.6
-0.2
-0.1
N.D.
carbon source
Suberic (C)
+0.2
-1.1
+0.5
-0.1
N.D.
nitrogen source
L-Tryptophan (N)
-0.1
-0.2
+0.4
-0.6
N.D.
carbon source
Disodium Glutarate (C)
-0.5
-0.6
+0.1
+0.6
N.D.
nitrogen source
casaminos (N)
+0.0
-0.9
+0.3
+0.3
N.D.
carbon source
L-Malic (C)
-0.4
-0.4
+0.3
+0.3
N.D.
nitrogen source
L-Leucine (N)
+0.2
-0.6
+0.3
-0.1
N.D.
stress
R2A with A22 0.01 mg/ml
-0.4
+0.5
+0.0
-0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.5
-0.4
-0.4
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.5
-0.8
+0.1
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.3
-0.2
+0.4
-0.3
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
-0.5
+0.5
+0.4
N.D.
carbon source
L-Asparagine (C)
+0.2
-0.5
-0.1
+0.6
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-0.3
+0.5
+0.3
N.D.
carbon source
Pimelic (C)
+0.2
-0.5
+0.3
+0.4
N.D.
nitrogen source
L-Glutamine (N)
-0.3
-0.1
+0.3
+0.7
N.D.
carbon source
propionate (C)
-0.2
+0.2
+0.6
+0.3
N.D.
carbon source
Ethanol (C)
+0.0
+0.3
+0.2
+0.7
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
+0.5
+0.5
+0.5
N.D.
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