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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01315 and RR42_RS01320 are separated by 59 nucleotides
RR42_RS01320 and RR42_RS01325 are separated by 0 nucleotides
RR42_RS01325 and RR42_RS01330 are separated by 20 nucleotides
RR42_RS01330 and RR42_RS01335 are separated by 222 nucleotides
RR42_RS01315: RR42_RS01315 - GNAT family acetyltransferase, at 299,366 to 299,869
_RS01315
RR42_RS01320: RR42_RS01320 - ATPase AAA, at 299,929 to 300,705
_RS01320
RR42_RS01325: RR42_RS01325 - hypothetical protein, at 300,706 to 301,023
_RS01325
RR42_RS01330: RR42_RS01330 - Fis family transcriptional regulator, at 301,044 to 302,765
_RS01330
RR42_RS01335: RR42_RS01335 - methylmalonyl-CoA carboxyltransferase, at 302,988 to 304,535
_RS01335
Group
Condition
RR42
_RS01315
RR42
_RS01320
RR42
_RS01325
RR42
_RS01330
RR42
_RS01335
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.0
+0.1
-0.5
-0.6
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.6
+0.0
-0.7
+0.1
nitrogen source
L-Glutamine (N)
-1.2
-0.0
-0.1
-0.0
-0.2
stress
R2A with sodium fluoride 100 mM
-0.6
-0.1
+0.2
-0.5
-0.3
carbon source
Dodecandioic (C)
+0.2
-0.6
+0.1
-0.3
-0.4
stress
R2A with nitrate 200 mM
-0.6
+0.1
-0.0
-0.5
+0.3
carbon source
Azelaic (C)
-0.3
+0.6
-0.3
-0.2
-0.5
stress
R2A with Lomefloxacin 0.001 mM
+0.9
-0.8
-0.2
-0.2
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.7
-0.5
-0.0
-0.2
-0.5
lb
LB
+0.4
-0.3
-0.0
-0.7
+0.2
carbon source
Heptanoic (C)
+0.3
+0.1
+0.1
-0.6
-0.3
carbon source
Heptanoic (C)
-0.4
+0.2
-0.3
+0.5
-0.3
carbon source
Protocatechuic Acid (C)
-0.7
+0.3
+0.2
+0.2
-0.2
nitrogen source
casaminos (N)
-1.0
+0.3
+0.1
+0.6
-0.1
carbon source
pyruvate (C)
-0.5
+0.1
+0.7
-0.2
-0.0
carbon source
Protocatechuic Acid (C)
+0.9
+0.7
-0.7
-0.2
-0.4
carbon source
Disodium Glutarate (C)
-0.6
+0.6
-0.2
+0.5
+0.0
carbon source
Octanoic (C)
-0.5
+0.6
-0.5
+0.6
+0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.5
-0.0
+0.4
+0.3
+0.3
carbon source
succinate (C)
-0.3
+0.2
+0.4
+0.5
-0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.4
-0.5
+0.3
+0.2
+0.3
carbon source
L-Leucine (C)
-0.4
+0.3
+0.0
+0.9
+0.0
nitrogen source
L-Tryptophan (N)
-0.0
+0.5
-0.0
+0.8
-0.2
carbon source
L-Alanine (C)
+0.3
+0.1
+0.4
+0.7
-0.1
stress
R2A with A22 0.01 mg/ml
+0.4
+0.5
+0.2
+0.4
-0.1
carbon source
L-Asparagine (C)
+0.5
+0.3
+0.3
+0.4
-0.1
nitrogen source
L-Valine (N)
+0.7
+0.6
+0.0
+0.3
-0.1
stress
R2A with Chloride 300 mM
+0.1
+0.4
+0.5
+0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.5
+0.1
+0.4
+0.7
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.5
+0.5
+0.6
+0.1
+0.6
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