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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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500 nt
RR42_RS01280 and RR42_RS01285 are separated by 116 nucleotides
RR42_RS01285 and RR42_RS01290 are separated by 461 nucleotides
RR42_RS01290 and RR42_RS01295 are separated by 141 nucleotides
RR42_RS01295 and RR42_RS01300 are separated by 12 nucleotides
RR42_RS01280: RR42_RS01280 - GMC family oxidoreductase, at 289,953 to 291,632
_RS01280
RR42_RS01285: RR42_RS01285 - acyl-CoA dehydrogenase, at 291,749 to 293,410
_RS01285
RR42_RS01290: RR42_RS01290 - thiamine biosynthesis protein ThiC, at 293,872 to 295,758
_RS01290
RR42_RS01295: RR42_RS01295 - cytochrome C biogenesis protein CcdA, at 295,900 to 297,078
_RS01295
RR42_RS01300: RR42_RS01300 - thiamine biosynthesis protein ThiS, at 297,091 to 297,288
_RS01300
Group
Condition
RR42
_RS01280
RR42
_RS01285
RR42
_RS01290
RR42
_RS01295
RR42
_RS01300
carbon source
Pimelic (C)
+0.1
-0.4
-5.6
N.D.
N.D.
carbon source
Octanoic (C)
+0.1
-0.4
-4.9
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.0
-4.5
N.D.
N.D.
carbon source
L-Leucine (C)
-0.1
-0.2
-4.4
N.D.
N.D.
nitrogen source
L-Lysine (N)
-0.0
-0.4
-3.8
N.D.
N.D.
carbon source
Azelaic (C)
+0.2
+0.2
-4.6
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.2
+0.0
-4.0
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.9
-3.0
N.D.
N.D.
carbon source
L-Histidine (C)
+0.1
-0.1
-4.1
N.D.
N.D.
nitrogen source
L-Leucine (N)
+0.0
+0.1
-4.2
N.D.
N.D.
carbon source
Pimelic (C)
+0.1
-0.2
-4.0
N.D.
N.D.
carbon source
pyruvate (C)
-0.1
-0.0
-3.8
N.D.
N.D.
carbon source
butyrate (C)
-0.1
+0.0
-3.8
N.D.
N.D.
carbon source
Heptanoic (C)
+0.2
-0.3
-3.7
N.D.
N.D.
carbon source
Ethanol (C)
-0.0
+0.2
-3.9
N.D.
N.D.
nitrogen source
L-Threonine (N)
-0.2
+0.2
-3.8
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
+0.6
-4.6
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
-0.0
-3.9
N.D.
N.D.
carbon source
Dodecandioic (C)
+0.1
+0.0
-3.8
N.D.
N.D.
carbon source
Octanoic (C)
+0.1
+0.3
-4.1
N.D.
N.D.
nitrogen source
L-Citrulline (N)
+0.0
+0.3
-4.0
N.D.
N.D.
carbon source
succinate (C)
-0.0
+0.1
-3.7
N.D.
N.D.
carbon source
L-Tryptophan (C)
+0.2
+0.4
-4.2
N.D.
N.D.
nitrogen source
nitrate (N)
+0.1
+0.2
-3.8
N.D.
N.D.
carbon source
L-Asparagine (C)
+0.1
+0.2
-3.7
N.D.
N.D.
carbon source
D-Fructose (C)
+0.0
+0.2
-3.7
N.D.
N.D.
carbon source
propionate (C)
+0.1
+0.2
-3.7
N.D.
N.D.
nitrogen source
L-Glutamine (N)
+0.2
+0.1
-3.7
N.D.
N.D.
nitrogen source
L-Valine (N)
+0.2
+0.5
-3.5
N.D.
N.D.
nitrogen source
L-Phenylalanine (N)
+0.2
+0.6
-3.3
N.D.
N.D.
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