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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS01235 and RR42_RS01240 are separated by 122 nucleotides
RR42_RS01240 and RR42_RS01245 are separated by 52 nucleotides
RR42_RS01245 and RR42_RS01250 are separated by 48 nucleotides
RR42_RS01250 and RR42_RS01255 are separated by 100 nucleotides
RR42_RS01235: RR42_RS01235 - 3-hydroxybutyrate dehydrogenase, at 279,478 to 280,260
_RS01235
RR42_RS01240: RR42_RS01240 - membrane protein, at 280,383 to 281,735
_RS01240
RR42_RS01245: RR42_RS01245 - polyphosphate kinase, at 281,788 to 282,597
_RS01245
RR42_RS01250: RR42_RS01250 - diaminopimelate epimerase, at 282,646 to 283,512
_RS01250
RR42_RS01255: RR42_RS01255 - lauroyl acyltransferase, at 283,613 to 284,506
_RS01255
Group
Condition
RR42
_RS01235
RR42
_RS01240
RR42
_RS01245
RR42
_RS01250
RR42
_RS01255
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
+0.2
+0.3
N.D.
-7.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
+0.2
+0.3
N.D.
-6.6
nitrogen source
Glycine (N)
+0.2
-0.2
+0.4
N.D.
-6.1
stress
R2A with copper (II) chloride 0.25 mM
-0.0
+0.1
-0.3
N.D.
-5.0
stress
R2A with Cobalt chloride 0.5 mM
-0.0
-0.0
+0.3
N.D.
-3.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.2
+0.0
N.D.
-2.2
carbon source
adipate (C)
-0.1
+0.0
-0.3
N.D.
-2.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.1
-0.1
N.D.
-2.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.1
+0.3
N.D.
-2.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-0.1
-0.2
N.D.
-1.6
stress
R2A with Lomefloxacin 0.00075 mM
+0.0
+0.1
+0.6
N.D.
-2.9
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.1
-0.2
N.D.
-1.8
carbon source
Heptanoic (C)
+0.2
+0.0
-0.0
N.D.
-2.2
carbon source
Suberic (C)
-0.2
-0.0
+0.2
N.D.
-1.8
carbon source
Octanoic (C)
-0.2
+0.0
+0.2
N.D.
-1.8
stress
R2A with Chloride 300 mM
+0.1
-0.0
+0.1
N.D.
-1.8
nitrogen source
D-Alanine (N)
+0.0
-0.2
+0.3
N.D.
-1.8
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
+0.3
-0.2
N.D.
-1.6
stress
R2A with nitrate 200 mM
-0.1
+0.2
+0.1
N.D.
-1.8
carbon source
adipate (C)
+0.0
+0.2
+0.3
N.D.
-2.1
carbon source
Heptanoic (C)
+0.0
-0.0
+0.3
N.D.
-1.7
nitrogen source
L-Lysine (N)
+0.1
+0.1
+0.4
N.D.
-1.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.4
-0.2
N.D.
+1.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.1
-0.0
N.D.
+1.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
+0.1
-0.0
N.D.
+1.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
+0.2
-0.0
N.D.
+1.4
lb
LB
-0.1
+0.2
+0.3
N.D.
+1.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.3
+0.5
N.D.
+1.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.2
-0.1
N.D.
+2.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.2
+0.2
N.D.
+2.8
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